AT5G41000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : YELLOW STRIPE like 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana metal-nicotianamine transporter YSL4 | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
YELLOW STRIPE like 4 (YSL4); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 6 (TAIR:AT3G27020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16420910..16423697 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73579.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.00 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.55 | ||||||||||||||||||||||||||||||||||||||||
| Length | 670 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METEIPRSTE ISETLLLPET NLDHGEYVPE WKEQITIRGL ISSALLGILF CIITHKLNLT IGIIPSLNVA AGLLGFFFIK SWTGFLSKLG FLSKPFTKQE 101: NTVIQTCVVS CYGLAYSGGF GSYLIAMDER TYKLIGSDYP GNNPEDVINP GLWWMTGFLF VVSFLGLFCL VPLRKVMILD YKLTYPSGTA TAMLINSFHN 201: NTGAELAGKQ VKCLGKYLSL SLVWSCFKWF FSGIGGACGF DHFPTLGLTL FKNTFYFDFS PTFIGCGMIC PHLVNCSVLL GAIISWGFLW PFISQHAGDW 301: YPADLKANDF KGLYGYKVFI AISIILGDGL YNLIKIIVVT VKEICNKSSR QHNLPVFTDI LDKSKTSVLM REKKKRDIIF LKDRIPLEFA VSGYVGLAAI 401: STAIIPLIFP PLKWYFVLCS YLVAPGLAFC NSYGAGLTDM SMPSTYGKTG LFIVASIVGN NGGVIAGLAA CGIMMSIVST AADLMQDFKT GYLTLSSAKS 501: MFVTQLLGTA MGCIIAPLTF WLFWTAFDIG DPDGLYKAPY AVIYREMAIL GVEGFAKLPK HCLALCCGFF IAALIVNLIR DMTPPKISKL IPLPMAMAGP 601: FYIGAYFAID MFVGTVIMLV WERMNKKDAD DYSGAVASGL ICGDGIWTIP SAILSILRIN PPICMYFRPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)