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AT1G16780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Inorganic H pyrophosphatase family protein
Curator
Summary (TAIR10)
Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.
Computational
Description (TAIR10)
VHP2;2; FUNCTIONS IN: inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: Golgi apparatus, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: vacuolar H+-pyrophosphatase 2 (TAIR:AT1G78920.2); Has 6490 Blast hits to 6472 proteins in 788 species: Archae - 67; Bacteria - 1308; Metazoa - 5; Fungi - 1; Plants - 281; Viruses - 0; Other Eukaryotes - 4828 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G16780-MONOMERBioGrid:23489EC:3.6.1.1eggNOG:COG3808
eggNOG:ENOG410IFIUEMBL:AC026237EMBL:CP002684EnsemblPlants:AT1G16780
EnsemblPlants:AT1G16780.1entrez:838249GeneID:838249Genevisible:Q9FWR2
GO:GO:0000139GO:GO:0004427GO:GO:0009678GO:GO:0015992
GO:GO:0016021GO:GO:0046872Gramene:AT1G16780.1gramene_pathway:3.6.1.1
gramene_pathway:PWYQT-4437HAMAP:MF_01129hmmpanther:PTHR31998hmmpanther:PTHR31998:SF11
HOGENOM:HOG000007098InParanoid:Q9FWR2InterPro:IPR004131KEGG:ath:AT1G16780
KO:K01507MINT:MINT-8063489PaxDb:Q9FWR2Pfam:PF03030
Pfam:Q9FWR2PhylomeDB:Q9FWR2PIR:C86303PIRSF:PIRSF001265
PRIDE:Q9FWR2PRO:PR:Q9FWR2ProteinModelPortal:Q9FWR2Proteomes:UP000006548
RefSeq:NP_173122.2SMR:Q9FWR2STRING:3702.AT1G16780.1TAIR:AT1G16780
tair10-symbols:AtVHP2;2tair10-symbols:VHP2;2TIGRfam:TIGR01104TIGRFAMs:TIGR01104
TMHMM:TMhelixUniGene:At.51638UniGene:At.51639UniProt:Q9FWR2
Coordinates (TAIR10) chr1:-:5739468..5743818
Molecular Weight (calculated) 91000.90 Da
IEP (calculated) 7.86
GRAVY (calculated) 0.53
Length 851 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKTIYGRCF SRSQYRRIKI QRPSSGAELP RSTGFIPLPL VRRANSLQNM MMDEDVEQAT LVSYSDKPRT FPDMRSKTYS PLIIRILRNL NVRALSVLLL
101: LSFGGIFYMG ARTSPIIVFV FVVCIISFML SVYLTKWVLA KDEGPPEMVQ ISDAIRDGAE GFLRTQYGTI SKMAFLLAFV ILCIYLFRNL TPQQEASGLG
201: RTMSAYITVA AFLLGALCSG IAGYVGMWVS VRANVRVSSA ARRSAREALQ IAVRAGGFSA LVVVGMAVIG IAILYSTFYV WLDVDSPGSM KVTDLPLLLV
301: GYGFGASFVA LFAQLGGGIY TKGADVGADL VGKVEHGIPE DDPRNPAVIA DLVGDNVGDC AARGADLFES IAAEIISAMI LGGTMAQKCK IEDPSGFILF
401: PLVVHSFDLV ISSIGILSIK GTRNASVKSP VEDPMVVLQK GYSLTIILAV LTFGASTRWL LYTEQAPSAW LNFFMCGLVG IITAYVFVWI SRYYTDYKYE
501: PVRTLALASS TGHGTNIIAG VSLGLESTAL PVLVISVAII SAFWLGNTSG LIDEKGNPTG GLFGTAVATM GMLSTAAYVL TMDMFGPIAD NAGGIVEMSQ
601: QPESVREITD VLDAVGNTTK ATTKGFAIGS AALASFLLFS AYMDEVSAFA NVSFKEVDIA IPEVFIGGLL GAMLIFLFSA WACAAVGRTA QEVVNEVRRQ
701: FIERPGIMDY KEKPDYGRCV AIVASSALRE MIKPGALAII SPIAVGFVFR ILGYYTGQPL LGAKVVAAML MFATVCGILM ALFLNTAGGA WDNAKKYIET
801: GALGGKGSDS HKAAVTGDTV GDPFKDTAGP SIHVLIKMLA TITLVMAPIF L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)