AT3G60740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TITAN 1 (TTN1); CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22447385..22453325 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139923.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1254 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASRAEEMSP TKIEIETAVK IEEEEDDEHD SKERVLQRYF LQEWKLVKSL LDDIVSNGRV VDPTSVHKIR SIMDKYQEQG QLVEPYLESI VSPLMFIIRS 0101: KTVDLEAKPD EILEIIKPIS IIIYALVTVC GYKAVIKFFP HQVSDLELAV LLLEKCHSTN SVSALRQEST GEMEAKCVTL LWLSILVLVP FDISSVDTSI 0201: ADDKTFGVDD LAPLVLKILG FCKDYLCSAG PMRRISGLLL SKLLTRPDMG KAFSSFFEWT YEVLSCKEDS VTNHFRLLGV MEALSAIFKT ASRKVLLDVL 0301: PIVLNDVTVL SKSNAAAKSS LLRKYLIKLT QRIGLVCLPH RSPSWRYVAQ TASLSENMST SSSQRLAPDH TVTAILQPES LDDQEDEDMD VPEILEEIIE 0401: MLLSGLRDTD TVVRWSAAKG IGRVTSRLTS VLSDEVLSSV LELFSPGEGD GSWHGGCLAL AELARRGLLL PRSFPLVVPV IVKALHYDVR RGPHSVGSHV 0501: RDAAAYVCWA FGRAYSHKDM KNVLDQLAPD LLIVGSFDRE VNCRRAAAAA FQENVGRQGN YPHGIDIVSI ADYFSLSSRV NSYLQVAVSI AQYEGYLYPF 0601: VDELLYNKIC HWDKSLRELA AEALAPLVKY EPKHFANYVL EKLIPCTLST DLCMRHGATL AAGEVVLALH QCGYVLSADS QKRMAGIVPS IEKARLYRGK 0701: GGEIMRLAVS RFIECISLSH VTLAERTERI LLDTLTENLR HPNSQIQNAA VSAVKQLVQS YLVGNDKKSV DLILKHLKHL TDPNVAVRRG SALALGVLPY 0801: ELLTAKWKDI VLKLCSACKI EVNPEDRDAE ARVNAVKGLT SVCETLTQKR ASDPGNDDLS LFLLIKTEVM DTLLKALDDY SVDNRGDVGS WVREAAVHGL 0901: EKCTYILCKK METYSEGDYN DDTSSLFDSN LATRLIGGML KQGVEKMDKL RETAAKVLQR ILYHKSVSVP HVPYREKLEE ILPNKANLQW AVPAFSFPRF 1001: VQLLKLRCYS KEVMSGLVIS IGGLQDSLRK ASLVALLEYM REGEAKDPKE QQSRESALGD DILWILQEYK KCDRVMVPCL QTIEILFSSK IFLNQESYTF 1101: SFYAGVMDSL AIELRASKDF TKLKAGLAIL GYIASVSHFI STKAFSQLLS FLGHRYPMIR KAAAEQVYLA LLQNGILVTE EKMEKVIEII SESCWEADME 1201: TTKTQRLELC ELAGLDHEVV FKTRNRLVIK DIAGNKSAAD ENASYSSLVD SSGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)