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AT5G23570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : XS domain-containing protein / XS zinc finger domain-containing protein-related
Curator
Summary (TAIR10)
Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.
Computational
Description (TAIR10)
SUPPRESSOR OF GENE SILENCING 3 (SGS3); CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17697DIP:DIP-29658NeggNOG:ENOG410IQ73eggNOG:ENOG4111E45
EMBL:AB025633EMBL:AF239719EMBL:BT002944EMBL:BT004380
EMBL:CP002688EnsemblPlants:AT5G23570EnsemblPlants:AT5G23570.1entrez:832422
GeneID:832422Genevisible:Q9LDX1GO:GO:0004526GO:GO:0005655
GO:GO:0005737GO:GO:0005783GO:GO:0005829GO:GO:0009616
GO:GO:0010025GO:GO:0010050GO:GO:0010267GO:GO:0016032
GO:GO:0048471GO:GO:0050688GO:GO:0051607GO:GO:0090502
Gramene:AT5G23570.1hmmpanther:PTHR21596hmmpanther:PTHR21596:SF12HOGENOM:HOG000085166
InParanoid:Q9LDX1IntAct:Q9LDX1InterPro:IPR005380InterPro:IPR005381
iPTMnet:Q9LDX1KEGG:ath:AT5G23570MINT:MINT-7014693ncoils:Coil
OMA:QRTKMQHPaxDb:Q9LDX1Pfam:PF03468Pfam:PF03470
Pfam:Q9LDX1PhylomeDB:Q9LDX1PRIDE:Q9LDX1PRO:PR:Q9LDX1
ProteinModelPortal:Q9LDX1Proteomes:UP000006548RefSeq:NP_197747.1SMR:Q9LDX1
STRING:3702.AT5G23570.1TAIR:AT5G23570tair10-symbols:ATSGS3tair10-symbols:SGS3
UniGene:At.31001UniProt:Q9LDX1
Coordinates (TAIR10) chr5:+:7943621..7945874
Molecular Weight (calculated) 71975.80 Da
IEP (calculated) 5.68
GRAVY (calculated) -1.09
Length 625 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRAGPMSK EKNVQGGYRP EVEQLVQGLA GTRLASSQDD GGEWEVISKK NKNKPGNTSG KTWVSQNSNP PRAWGGQQQG RGSNVSGRGN NVSGRGNGNG
101: RGIQANISGR GRALSRKYDN NFVAPPPVSR PPLEGGWNWQ ARGGSAQHTA VQEFPDVEDD VDNASEEEND SDALDDSDDD LASDDYDSDV SQKSHGSRKQ
201: NKWFKKFFGS LDSLSIEQIN EPQRQWHCPA CQNGPGAIDW YNLHPLLAHA RTKGARRVKL HRELAEVLEK DLQMRGASVI PCGEIYGQWK GLGEDEKDYE
301: IVWPPMVIIM NTRLDKDDND KWLGMGNQEL LEYFDKYEAL RARHSYGPQG HRGMSVLMFE SSATGYLEAE RLHRELAEMG LDRIAWGQKR SMFSGGVRQL
401: YGFLATKQDL DIFNQHSQGK TRLKFELKSY QEMVVKELRQ ISEDNQQLNY FKNKLSKQNK HAKVLEESLE IMSEKLRRTA EDNRIVRQRT KMQHEQNREE
501: MDAHDRFFMD SIKQIHERRD AKEENFEMLQ QQERAKVVGQ QQQNINPSSN DDCRKRAEEV SSFIEFQEKE MEEFVEEREM LIKDQEKKME DMKKRHHEEI
601: FDLEKEFDEA LEQLMYKHGL HNEDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)