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AT1G80790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
cytosol 0.000
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : XH/XS domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 81745 Blast hits to 47168 proteins in 2099 species: Archae - 1218; Bacteria - 10615; Metazoa - 37220; Fungi - 5411; Plants - 3180; Viruses - 320; Other Eukaryotes - 23781 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJMPeggNOG:ENOG410YGHFEMBL:AC011713EMBL:AK227040
EMBL:AK317564EMBL:CP002684EnsemblPlants:AT1G80790EnsemblPlants:AT1G80790.1
entrez:844418GeneID:844418Genevisible:Q9SAI1GO:GO:0004526
GO:GO:0005655GO:GO:0080188GO:GO:0090502Gramene:AT1G80790.1
hmmpanther:PTHR21596hmmpanther:PTHR21596:SF3HOGENOM:HOG000237495InParanoid:Q9SAI1
InterPro:IPR005379InterPro:IPR005380InterPro:IPR005381KEGG:ath:AT1G80790
ncoils:CoilOMA:NVNSTRYPaxDb:Q9SAI1Pfam:PF03468
Pfam:PF03469Pfam:PF03470Pfam:Q9SAI1PhylomeDB:Q9SAI1
PIR:E96840PRIDE:Q9SAI1PRO:PR:Q9SAI1ProteinModelPortal:Q9SAI1
Proteomes:UP000006548RefSeq:NP_178194.1SMR:Q9SAI1STRING:3702.AT1G80790.1
TAIR:AT1G80790UniGene:At.33876UniProt:Q9SAI1
Coordinates (TAIR10) chr1:+:30360280..30362856
Molecular Weight (calculated) 74297.60 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.95
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNSSDEESE ISESEIDVYY EKPYEKLMNG DYKVKVKDTF RCPFCAGKKK QHYKYKELLA HASGVAKGSA SRSAKQKANH FALAKYMENE LAGDADVPRP
101: QIPSSSTEQS QAVVDDIYVW PWMGIVINPV RRTDNKNVLL DSAYWLKKLA RFNPLEVKTL WLDQESVVAV IPQFNSGWSG FKSVTELEKE YEIRGCGRKD
201: WIDKRGDWRS KAYGWCARAD DYNSQGSIAE YLSKVGKLRS FSDITKEEIQ NKSIVVDDLA NKIAMTNEDL NKLQYMNNEK TLSLRRVLIE KDELDRVYKQ
301: ETKKMQELSR EKINRIFREK ERLTNELEAK MNNLKIWSKQ LDKKQALTEL ERQKLDEDKK KSDVMNSSLQ LASLEQKKTD DRVLRLVDEH KRKKEETLNK
401: ILQLEKELDS KQKLQMEIQE LKGKLKVMKH EDEDDEGIKK KMKKMKEELE EKCSELQDLE DTNSALMVKE RKSNDEIVEA RKFLITELRE LVSDRNIIRV
501: KRMGELEEKP FMTACRQRCT VEEEAQVQYA MLCSKWQEKV KDSAWQPFKH VGTGDRKKEV VDEEDEEIKK LREEWGEEVK NAVKTALEEL NEFNPSGRYS
601: VPELWNSKQG RKATLKEVID YITQQVKTLK RRRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)