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AT2G20790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : clathrin adaptor complexes medium subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968); Has 294 Blast hits to 294 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 151; Fungi - 30; Plants - 53; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
BioGrid:1961eggNOG:ENOG410XPFSeggNOG:KOG0937EMBL:AC006234
EMBL:AF462850EMBL:AY090282EMBL:CP002685EnsemblPlants:AT2G20790
EnsemblPlants:AT2G20790.1EnsemblPlants:AT2G20790.2entrez:816608ExpressionAtlas:Q8W0Z6
GeneID:816608Genevisible:Q8W0Z6GO:GO:0006886GO:GO:0016192
GO:GO:0030131GO:GO:0030659hmmpanther:PTHR10529hmmpanther:PTHR10529:SF240
HOGENOM:HOG000030631InParanoid:Q8W0Z6InterPro:IPR018240InterPro:IPR028565
iPTMnet:Q8W0Z6KEGG:ath:AT2G20790KO:K19023OMA:NCRAELE
PaxDb:Q8W0Z6Pfam:PF00928Pfam:Q8W0Z6Pfscan:PS51072
PhylomeDB:Q8W0Z6PIR:D84593PRIDE:Q8W0Z6PRO:PR:Q8W0Z6
PROSITE:PS00991PROSITE:PS51072ProteinModelPortal:Q8W0Z6Proteomes:UP000006548
RefSeq:NP_850004.1RefSeq:NP_973495.1scanprosite:PS00991STRING:3702.AT2G20790.1
SUPFAM:0038852SUPFAM:SSF49447TAIR:AT2G20790UniGene:At.28257
UniProt:Q8W0Z6
Coordinates (TAIR10) chr2:-:8950162..8952613
Molecular Weight (calculated) 66708.20 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.16
Length 613 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSGCSIRAL WIINNQDTVV FSRRFPVVEK QWCSAYKTEN ENTGLDLPRL PTDQQISDSF TRRKRREGST RGYGIRVAQS TKGSDSWVDD PITRHIISLC
101: LTEEDDDDDD ERNILWPIAL HTKALYSILV LPLVEPKEMK DYVKLCRRSD CGPAVGEDLS LSSLLLNISS ITGAFMVAHA FGDIISGDTV EPEVVVSVSP
201: SVGGLFDSLT GSIGISSRAK PVAAPVASSN PSGAAITGAT ASDAPKAGSR LLDRDLLRNF IATAMPFGTP LDLSLSNISA MKANGFSSAD PPPQELKQPA
301: WKPYLYKGKQ RLLFTIHETV SAAMYDRDEI PDNVSVAGQI NCRAELEGLP DVSFPLAGLS TAHIEAISFH PCAQVPAHGI DKQNIVFQPP LGNFVLMRYQ
401: AGCGLGPPVK GFYQLSMVSE DEGAFLFKVH LMEGYKAPLS MEFCTITMPF PRRRIVAFDG TPSAGTVLTT EHSVEWRILG SGRSLSGKSL EATFPGTIKF
501: SPLQSRRKGD GDDEESEDES AENVVNVEDF LVQKMNKDLP AAELEEPFCW QAYDYAKVSF KIVGASVSRM SIDTKSVNIY PTTKSPVEFS AQVTSGDYIL
601: WNTLGKAPSA AVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)