AT2G32930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger nuclease 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a zinc finger protein. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
zinc finger nuclease 2 (ZFN2); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G04990.1); Has 1502 Blast hits to 1018 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 453; Fungi - 164; Plants - 727; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13965990..13968419 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49750.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSETQQQVQN STGSIRSPDK IEDTFRRMKV NEDNMEQSSP YPDRPGERDC QFFLRTGQCG YGNSCRYNHP LTNLPQGIIY YRDQLPERVG QPDCETGACK 101: YGPTCKYHHP KDRNGAGPVL FNVLGLPMRQ GEKPCPYYMQ TGLCRFGVAC KFHHPHPHSQ PSNGHSAYAM SSFPSVGFPY ASGMTMVSLP PATYGAIPRP 201: QVPQSQAYMP YMVAPSQGLL PPQGWATYMT ASNPIYNMKT QLDSSSSASV AVTVTSHHHS FSERAECRFF MNTGTCKYGD DCKYSHPKER LLQSPPTLLN 301: PIVLPARPGQ PACGNFKAYG FCKFGANCKF DHSMLLNPYN NTGLAMSSLP TPYPYAPPVS TNLRISSPPS PSDMTTLSNG KPAAAEAQSL ETEKQDDSPT 401: EPEKSEVEDS LPPNGSDSTS LPNDKPDAET EKQDDDSAEL DSSKVQDSSD KST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)