AT3G45090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60760.1); Has 12357 Blast hits to 4786 proteins in 479 species: Archae - 104; Bacteria - 5921; Metazoa - 2136; Fungi - 801; Plants - 320; Viruses - 126; Other Eukaryotes - 2949 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16490752..16494452 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80252.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.42 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||
| Length | 717 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMTEATKVLY IVVREEGDDD DNNGDDSFRY TRPVLQSTLQ LMGCKARHAF KISRRVFELI RSEGSCNTSP ENGKEPEFAK EVGGSTCVEK LNCLVVAGDV 101: DKNKSKPFEM YKRRTTVVVS REIFVDVVCD ALAEYKYVGR DQRADLILAC RIRERKESVT VLLCGTSGCG KSTLSALLGS RLGITTVVST DSIRHMMRSF 201: ADEKQNPLLW ASTYHAGEYL DPVAVAESKA KRKAKKLKGS RGVNSNAQKT DAGSNSSTTE LLSHKQMAIE GYKAQSEMVI DSLDRLITTW EERNESVVVE 301: GVHLSLNFVM GLMKKHPSIV PFMVYIANEE KHLERFAVRA KYMTLDPAKN KYVKYIRNIR TIQDYLCKRA DKHLVPKINN TNVDKSVATI HATVFGCLRR 401: RETGEKLYDT TTNTVSVIDD EHRNQCAANS LTSKGMFQVI QRQGSSRRFM ALCNTDGTVA KTWPVASVGK IRKPVVNTEM DDGTEHQLHK AEPVNLQFGH 501: FGISAWPSDG ATSHAGSVDD LRADIIETGS RHYSSCCSSP RTSDGPSKEL MEEQSVNGSD EDDEEGDDDF HEPDSDEDLS DNNDERNRDE IGSVDEESTK 601: SDEEYDDLAM EDKSYWTDNE EEESRDTISM VSQNNHNEAS KTNKDDKYSQ NLDLFLKTTN QPLTESLELT SEYRNRMGVA ASDKAKMRKR SLSIPPVGKH 701: GSIIDDQILA NQTDSVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)