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AT4G07410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G27470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQNReggNOG:KOG2048EMBL:AY080667EMBL:AY133764
EMBL:CP002687EnsemblPlants:AT4G07410EnsemblPlants:AT4G07410.1entrez:826172
ExpressionAtlas:Q8RXU6Gene3D:2.130.10.10GeneID:826172GO:GO:0005634
GO:GO:0009793GO:GO:0010073GO:GO:0010305GO:GO:0010311
GO:GO:0010449GO:GO:0035266GO:GO:0048366GO:GO:0048569
GO:GO:2000012Gramene:AT4G07410.1hmmpanther:PTHR22847HOGENOM:HOG000015194
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986OMA:REFTQFA
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q8RXU6
PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_567317.2
SMART:SM00320SMR:Q8RXU6STRING:3702.AT4G07410.1SUPFAM:SSF50978
TAIR:AT4G07410UniGene:At.21924UniProt:Q8RXU6
Coordinates (TAIR10) chr4:-:4201465..4205136
Molecular Weight (calculated) 90274.50 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.31
Length 815 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEYRCSSVD WKPSPVVALA NSSDDSQVAA AREDGSLEIW LVSPGAVGWH CQLTIHGDPN SRISSLAWCC SPSIGLPSGR LFSSSIDGSI SEWDLFDLKQ
101: KIVLESIGIS IWQMALAPIS GFSSDVEGIK NGYLSEKSND EEEIGSEEDG SDSDEFHEKS EEEIDRILAA ACDDGCVRLY RISNLEKLTY YRSLPRVSGR
201: ALSVTWSPDA KRIFSGSSDG LIRCWDATSC HEVYRITAGL GGLGSSSEIC VWSLLSLRCS VLVSGDSTGT VQFWDSEHGT LLEAHSNHKG DVNTLAAAPS
301: HNRVFSAGAD GQVILYKLSG STNGSQDLKP SSSQKWDYIG YVKAHTHDIR ALTVAVPISR EDPFPDDILP DKASRKHRKK GKPVDFTYHK WAHLGVPMLI
401: SAGDDAKLFA YSIQEFTKFS PHDICPAPQR IPMQMVHNSM FNKTSLLLVQ GISTLDILRL NISSDSSGRA STKSLVRVKS RDARKIICSA ISNTGSHFAY
501: SDQIGPSLFE LKKNEFTKCP WSVSRRRLPE LPFAHSMIFS SDCSRLIIAG HDRRIYTIDI SSLELVYAFT PSREEHEGEA PTPKEPPITK LFTSSDGQWL
601: AAINCFGDIY VFNLETQRQH WFISRLDGAS VTAAGFHPWN NNALVISTSS NQVFAFDVEA RQLGKWSLLN TYVLPKRYQE FPGEVLGLSF SPSPNSSSVI
701: VYSSRAKCLI DFGKPVEEDE EYDLPNGNLS KTLEGKLVNL GLKKGKGTNR KRRLDEYQLE GKSNERKNFE ILPSNHPVLF VGHLSKNSIL VIEKPWMDVV
801: KSLDNQPVDR HIFGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)