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AT1G77320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription coactivators
Curator
Summary (TAIR10)
Mutant is defective in meiosis and produces abnormal microspores. Encodes a BRCT-domain-containing protein that could be specific to the meiotic cell cycle and that plays a crucial role in some DNA repair events independent of SPO11 DSB recombination repair.
Computational
Description (TAIR10)
meiosis defective 1 (MEI1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: female meiosis, reciprocal meiotic recombination, response to DNA damage stimulus, male meiosis; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.2); Has 1189 Blast hits to 732 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 465; Plants - 183; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPFHeggNOG:KOG1929EMBL:CP002684EnsemblPlants:AT1G77320
EnsemblPlants:AT1G77320.1entrez:844068ExpressionAtlas:F4I701Gene3D:3.40.50.10190
GeneID:844068GO:GO:0006974GO:GO:0007143Gramene:AT1G77320.1
hmmpanther:PTHR13561hmmpanther:PTHR13561:SF20InParanoid:F4I701InterPro:IPR001357
OMA:GFEKDEKPaxDb:F4I701Pfam:PF00533Pfam:PF12738
Pfscan:PS50172PRIDE:F4I701PROSITE:PS50172ProteinModelPortal:F4I701
Proteomes:UP000006548RefSeq:NP_177856.2SMART:SM00292SMR:F4I701
STRING:3702.AT1G77320.1SUPFAM:SSF52113TAIR:AT1G77320tair10-symbols:MEI1
UniGene:At.34497UniProt:F4I701
Coordinates (TAIR10) chr1:+:29056740..29062710
Molecular Weight (calculated) 108022.00 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.47
Length 972 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTTQLFKGA NVFMSRNLVP PEVFDTLLDA FKLNGAEIFL CCDPSRSGPS DFHVIASPDH EKFKDLKAKG CNLIGPQCAL FCAKEGRPLP QRGFTCCLAM
101: DGLKVLASGF LVDEKVKIKE LVTSMGGVLL SRASSDVNFV IVKNVLAAKY KWALNKKPIV TLNWLHRCWN EHRVVPQEPY KIPPFSGLTI CVTRIPADER
201: KGMEKVISEY GGSYSAELTK SCTHLIADAA EGDKYKVARK WGHIQIVTRK WFQQSIDKKV CLNEESYPVL GSIPLTRGVR DLGVHNGLEK FPSAATASAA
301: DSYVSCAQSR DSDIEASASQ NVFPTSMNPS TDVKEPGGGP TARPQEQNID GCTARDSESE DNDLYLSDCR IFLLGFEASE MRKLAKLVRR GGGSRYMLLN
401: ERMTHIVVGT PSESEKREAR SVAASGVIQV VIPSWLEDCD REKKEIPVHN IYTANHLILP RDSACLTKGS FARMSSMEQT KNTHDQTMVY DSSSRSINVS
501: NGPATLLGKN KEAMQEFGRK DEIHTGRKIV SPTQKETLIS LVTCESKEQR SIQCEFSGQN DQERKSSVFK GETFCFSHSF PEDRRPQIVE WVNQGGGEVV
601: NDPLINNAHF TIECHGGFQS TETTQTIYVS SHWVRNCLKV GCLLAVSSHI LYSPLPCQTP LPGFESLCIC SSQHNEKNVE LLRNLSVVLG ADFVERLTRK
701: VTHLICNFAK GDKYVRASKW GIISVTPDWL YECVRQNQVV CTDNFHPREL TTQDREAGSQ FHTQFVPMAS RDSMSLPVSH SEDREKIQSF AGKSGCGKGE
801: VYNRLGEIGK EQTFPSKKAK LLRDGQESDV FPVRELPSNC DRPSHSGDGI VTGYDVASGR EVPDVADTIE DLLEQTSKIQ DQKSPGRILE KTHFSTSEQY
901: NTGNHSVTGL SRHWINRVHK NDDMGSPPGD ATTDTYGNFS ETQTESQVVG YEEDLSGRQM LIDRVRTRSS LT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)