suba logo
AT4G14970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 257 Blast hits to 164 proteins in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT6BeggNOG:KOG4712EMBL:CP002687EnsemblPlants:AT4G14970
EnsemblPlants:AT4G14970.1entrez:827156GeneID:827156GO:GO:0006281
GO:GO:0009507Gramene:AT4G14970.1hmmpanther:PTHR32086InParanoid:F4JIJ1
InterPro:IPR016024InterPro:IPR029448iPTMnet:F4JIJ1KEGG:ath:AT4G14970
KO:K10891OMA:VIDVWLLPaxDb:F4JIJ1Pfam:PF14631
PRIDE:F4JIJ1ProteinModelPortal:F4JIJ1Proteomes:UP000006548Reactome:R-ATH-6783310
RefSeq:NP_193233.5STRING:3702.AT4G14970.1SUPFAM:SSF48371TAIR:AT4G14970
UniGene:At.54323UniProt:F4JIJ1
Coordinates (TAIR10) chr4:+:8553854..8561664
Molecular Weight (calculated) 166807.00 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.14
Length 1489 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVFLSRKKPP PPPSSSSAAP SLKIPQPQKE SVEPDAVEKM TAILAEVGCT LMNPYGPPCL PSDLHAFRRN LTGRLSSFSA NSGERDNVGA LCSVFVAGFS
0101: LYIQSPSNLR RMLSSSSTTK RDESLVRNLL LVSPIQLDIQ EMLLEKLPEY FDVVTGCSLE EDVARLIINH FRWLDFIVNP HVFTDKLMQV LSICPLHLKK
0201: EIIGSLPEII GDHNCQAVVD SLEKMLQEDS AVVVAVLDSF SNLNLDDQLQ EQAITVAISC IRTIDGEHMP YLLRFLLLAA TPVNVRRIIS QIREQLKFTG
0301: MSQPCASQNK LKGKVPAYNA EGSILHALRS SLRFKNILCQ EIIKELNSLE KPRDFKVIDV WLLILMYMNG DPVRKSIEKI FKKKVVDECI QEALLDQCIG
0401: GNKEFVKDNF ASFVSLAEHL LSSKEEKARE IGSHIYSRLF EEFTDNYSRQ EILGALVTHV GSDNKFEVSS VLEMMTALVK KYAQQLLPFS SHINGISGTC
0501: ILDYLEGFTI DNLHKVYEVF SLLALSARAS GDSFRSSISN ELMMIVRKQV SHPDLKYKKM GLVGSLRIVS SLGDAKSVPD FSSSQVSDCG EILELLKTSV
0601: ESCRQSNLAL IMFYDEFATI LSHKLLQPEI MEWIGKHLGE FESLFLADLE NEKMAEKGSY SGLEGDLWMN LDGSISPICL NILALASSSS ESCCLQILPS
0701: NFLLLSTVER LTNDGSLAGV DALLGCPLHL PSSKYFAAAG WQSLAKKQKE ILSLSLYYAA NWIRELLNAF SSQIDEKIGC ISQATVKDVT TKLLKRLRNL
0801: VFLESLLSNL ITLSPQSLPE LHPYSESHVE HPRKKNEKRK LDDDASQRKV SMKNNLKKSK HSDVNEKLRQ PTIMDAFKKA GAVMSHSQTQ LRGTPSLPSM
0901: DGSTAAGSMD ENCSDNESLI VKIPQVSSAL EAQRFKFRPL LPQCLSILNF PKVLSQDMGS PEYRAELPLY LYLLHDLHTK LDCLVPPGKQ HPFKRGSAPG
1001: YFGRFKLVEL LNQIKRLFPS LRIHLNIAIS LLIRGDETSQ TTWRDEFALS GNPNTSSIVV SESLVYTMVC KEVLYCFSKI LTLPEFETDK SLLLNLLEAF
1101: QPTEIPVANF PDFQPFPSPG TKEYLYIGVS YFFEDILNKG NYFCSFTDDF PYPCSFSFDL AFECLLTLQL VVTSVQKYLG KVSEEANRKR NPGHFHGLVP
1201: NLHAKLGTSA EKLLRHKWVD ESTDNKGLKN KVCPFVSNLR IVQFTGEMVQ TILRIYLEAS GSTSDLLDEL ACTILPQASL SKSTGEDDDA RDHEFPTLCA
1301: ATFRGWYKTL LEENLAILNK LVKTVSSEKR QNCQPKTTEA HLKNIQKTVN VVVSLVNLCR SHEKVTIHGM AIKYGGKYVD SFLKVFDFLE AHFQDHKELV
1401: IQLGMKQTAI TSKIPATKRS LERFLFHVKA LLHRTSGGSN FWMGSLKHKD LRGQIVSSQA YIDNEADEVE ETMSGEEEPM QEDELPLTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)