AT1G29630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 5'-3' exonuclease family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
5'-3' exonuclease family protein; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G18090.2); Has 2289 Blast hits to 1947 proteins in 363 species: Archae - 277; Bacteria - 0; Metazoa - 618; Fungi - 685; Plants - 238; Viruses - 12; Other Eukaryotes - 459 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10349587..10353538 | ||||||||
| Molecular Weight (calculated) | 74399.40 Da | ||||||||
| IEP (calculated) | 7.07 | ||||||||
| GRAVY (calculated) | -0.54 | ||||||||
| Length | 665 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIQGLLPLL KSIMVPIHIK ELEGCIVAVD TYSWLHKGAL SCSRELCKGL PTKRHIQYCM HRVNLLRHHG VKPIMVFDGG PLPMKLEQEN KRARSRKENL 101: ARALEHEANG NSSAAYECYS KAVDISPSIA HELIQVLRQE NVDYVVAPYE ADAQMAFLAI TKQVDAIITE DSDLIPFGCL RVIKHLKYST VSVPPLYEES 201: FKRALLTFKH QRVYDPNAED IIHLCDISDN LGEDSDFVGP SMPQDIAKGI ALGQLDPFTQ LPFQAESVTP KLAVDDISRP KSFKPETVKK KLDLPVQKNL 301: LTKYFCFASV EAKRKFKAPR ISPMSLTPTD ESPSIPDDNT PDLDALSSQT TNESPVYSLG ENPCVSEVAE KRDSPDDDAV ERNHKDLHHK YCEREVDRPK 401: SDSLKVIVRS KYFKQKQEDK SLKQSIPCLN DCSVIGQRKA VKTVINMSSA SKREESHRAI ATSPCLHHDR IYNDHEDAKE ASFSAMNEVA ERTINTHKIN 501: HQINEEEQNP SVEIPSAFST PENVIPLSSI AIDSCHGVAT GKRKLDSDEN LHKENLKSKH MRMDETDTAL NAETPLETDD VEKFGSNISH IGHYSEIAEK 601: SVERFVSAIS SFKYSGTGSR ASGLRAPLKD IRNTCPSKGL SLKPDISKFG YASSNRHMVT KSRRM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)