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AT4G39380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY7MeggNOG:ENOG4111TCZEMBL:AL078620EMBL:AL161595
EMBL:CP002687EnsemblPlants:AT4G39380EnsemblPlants:AT4G39380.1entrez:830093
ExpressionAtlas:Q9SVB9GeneID:830093Gramene:AT4G39380.1hmmpanther:PTHR21677
HOGENOM:HOG000006010ncoils:CoilPhylomeDB:Q9SVB9PIR:T09354
Proteomes:UP000006548RefSeq:NP_195648.1STRING:3702.AT4G39380.2TAIR:AT4G39380
UniGene:At.50412UniProt:Q9SVB9
Coordinates (TAIR10) chr4:-:18309628..18311874
Molecular Weight (calculated) 56773.40 Da
IEP (calculated) 7.74
GRAVY (calculated) -0.71
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MARKKTETAT ESSKEIKAKG KFTRAKKSMK TTTKNIHQSG KHNSGKEEKY KCSAQPSSSQ EQRLIHTEDQ TQKVPVLDIH SSKDVPRSGK MKLQLFPLDA
101: HTREGLEKDG FHPYLELTLS SRKKISSVLQ RIHSKWGSSE IARGDPTLYP YDTSVLASGH KWVANSNITT GNVYEAIGAP FIFRLRYGWS SATENKTNEP
201: PSPSTPGTGT QMLGSENPLT MLSSPNQVTD TPPLENLPHD GQVESTENKI NDGSGPTLLF WDDGLTSLSI GGLLSEVSLK GNFGNHCKNS NAGNANATLW
301: EDNLTNISIG GLFSEASLQD RWHMNNEREP AHNGQSIGSI GGLLSEASIL GEGRISDCNK TWETRRAIKQ PPLPLISDSL DAFLVNQTDN RRAPCHAPLP
401: ESSHSSILDA EDTCHAFSFR KRTTITPKVH DQVSGEVEKE KQIDESNPAK PLLGSSVFNQ DSSLGLSGIK WAESRGPFDF GLSSSRKFAN GDSVSFGAVV
501: KDLQEMEPLE KKIKLQKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)