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AT1G67180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivators (TAIR:AT4G02110.1); Has 2482 Blast hits to 2442 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 1048; Fungi - 450; Plants - 465; Viruses - 61; Other Eukaryotes - 458 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YJ3AeggNOG:KOG0825eggNOG:KOG2043EMBL:AC004146
EMBL:CP002684EnsemblPlants:AT1G67180EnsemblPlants:AT1G67180.1entrez:843038
Gene3D:3.30.40.10Gene3D:3.40.50.10190GeneID:843038GO:GO:0008270
Gramene:AT1G67180.1hmmpanther:PTHR13561hmmpanther:PTHR13561:SF26HOGENOM:HOG000077557
InterPro:IPR001357InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907
InterPro:IPR018957KEGG:ath:AT1G67180OMA:RVVSHRWPfam:PF00097
Pfam:PF12738Pfscan:PS50089Pfscan:PS50172PhylomeDB:Q9ZW89
PIR:G96695PROSITE:PS00518PROSITE:PS50089PROSITE:PS50172
Proteomes:UP000006548RefSeq:NP_176889.1scanprosite:PS00518SMART:SM00184
SMART:SM00292SMR:Q9ZW89STRING:3702.AT1G67180.1SUPFAM:SSF52113
SUPFAM:SSF57850TAIR:AT1G67180UniGene:At.50009UniProt:Q9ZW89
Coordinates (TAIR10) chr1:+:25130099..25132169
Molecular Weight (calculated) 51932.50 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.80
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MENVVATVSG YHGSDRFKLI KLISHSGASY VGAMSRSITH LVCWKFEGKK YDLAKKFGTV VVNHRWVEEC VKEGRRVSET PYMFDSGEEV GPLMIELPAV
101: SEEAKVTKKV NKASETFDKY FSNGGENRSG STSELATWME KNVEANRHSV RLRTKRPSSI LENKENSGVA ESSRKGKKRV VKQRSYRNLI DLESDEESDN
201: NHHDNSDENQ NETQDHREPA DENVRGFVFE QGETSALRHP GDLATPNWDV DEIEESENWS HSAVFKRPRS FSPEIKPQDD DESTREETEA TEKAPAQVSC
301: IICWTEFSSS RGILPCGHRF CYSCIQKWAD RLVSERKKTT CPLCKSNFIT ITKIEDADSS DQKIYSQTVP DLSSTNNILV VLPEEEEQRQ TLNPLTRASG
401: CSRCYLTEPE ELLIRCHLCN FRRIHSYCLD PYLLPWTCNH CNDLQMMYHR RNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)