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AT5G12920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 51 Blast hits to 51 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G12920EnsemblPlants:AT5G12920.1entrez:831132
ExpressionAtlas:F4K106Gene3D:2.130.10.10GeneID:831132Gramene:AT5G12920.1
hmmpanther:PTHR22850hmmpanther:PTHR22850:SF94InterPro:IPR015943ProteinModelPortal:F4K106
Proteomes:UP000006548RefSeq:NP_196796.5SMR:F4K106SUPFAM:0049172
TAIR:AT5G12920UniGene:At.50452UniProt:F4K106
Coordinates (TAIR10) chr5:-:4077917..4082585
Molecular Weight (calculated) 60150.50 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.44
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSHKDTPAP TLSYQVVSSP LKAVETGHKV RMDLIKKSKL RYHRGQKSME KYLVSPEPSP AKSRTTVRRP WKRSLIEVNG RLDSAYRHEL YSRVAHSYSE
101: IGKFSHFYHL NENPCITHMM QIQSLYQCPT MRGVAGLDFD NRGIFLVSVT RSGCLMVHDF ESLYCQSKLG PGSAEDESKH VVHFSYPPGR EFDVARWNPS
201: NQNEVACTSR KHDQVLIFDI SYMSPKPTEV LQTRQKLSII GRKISRGLSD VAITSDEDSR IFSPDTLGMV HVWDRRAGVS PCIELSTDRY DSIKSIQIYV
301: DNQTIFGAGK EGIIHIWDLR GGRNSSAFQS RKDVSLTRGE LELAMAMSQL PLASLHLAPK LQKIASLKAQ SEIVPKEIHS IDVNPSSPHQ LAFHLDDGWS
401: GVLDIYKSEV THVHCPPPAW LDGSNSSADL ILRKPSWLPT SSIYVVGSMS EKGIHVLDFH PSSRSPCHVD YDEDTQRNEK RDKCNHRNKF VSLSETVTGC
501: AAHPLNGMIV AGTQNSSLLL IAQMHCSSSS ETAEGEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)