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AT3G17030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding proteins superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding proteins superfamily; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 37 Blast hits to 37 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFKJeggNOG:ENOG4111Y9VEMBL:CP002686EnsemblPlants:AT3G17030
EnsemblPlants:AT3G17030.1entrez:820959GeneID:820959Gramene:AT3G17030.1
hmmpanther:PTHR36033hmmpanther:PTHR36033:SF1InParanoid:F4J3Z2InterPro:IPR012340
iPTMnet:F4J3Z2KEGG:ath:AT3G17030OMA:CYLRTARPaxDb:F4J3Z2
PRIDE:F4J3Z2ProteinModelPortal:F4J3Z2Proteomes:UP000006548RefSeq:NP_188328.5
SUPFAM:SSF50249TAIR:AT3G17030UniGene:At.38802UniProt:F4J3Z2
Coordinates (TAIR10) chr3:-:5804509..5808462
Molecular Weight (calculated) 74170.70 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.15
Length 668 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDTNGASLI EIGDQEEVED PFLAFLDYAR TVISPEDDED EKEESKRGPG EAMTEASGPG WGWVASRILK TCTAYSSGVT AAILLSDLSQ AWHEQNKPGM
101: SKKKPELIDQ LKKGHRRRRL ANTVTIDSIY EKNFLSMNSV LEAVIINADV LPGTNIFMLT LGDFWSSNTI DLYLHRRYYE LVETPNGILR KGREVLITGC
201: YLRTAREGFG TPRLLPTEYL VVLLDEDQDD DAILIAAQFC SDTFSSVSLD AFNDGASYSL YARIESIGPL ESELTFSTAR RRQISLVDGD GDRLKFILWG
301: EQVIVANLLS VGSVLGIERP YISSLEESAM EGNYEFCLEY GSATHLYLVP STLQEERVCV ALSQHQCQGS KLLGSVGVSQ VTLPRDADGS VDFSNYPFRT
401: MITDIRDKTT GISLYGVVTD ISCDPNATGV VFSLKIEDTT GAIWAKLHFT NYWSLGRLGL GHVVYVSGLS CKITKENCIE MLWHEKDEKA TFVNLSCLPA
501: FLTSSCIHLI STLSQISKQR KPAINICRVK LDEIDQCHNI NTRLAHSLCG HFIDEESSSS YGANLHCSFC RVSCNSNTEV VRTFHITITL ADEETKLYAW
601: CTGQSASAIL QISPDEFCDL PEDDQLMYPS SLENEWFLVI LANSGSRNLG SGHETDDTCW EITRALKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)