AT3G13020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT transposon superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13030.3); Has 668 Blast hits to 634 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 657; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4166995..4168917 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68176.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGTVVDVRE HGICVDKKKS RVKCNYCGKE MNSFHRLKHH LGAVGTDVTH CDQVSLTLRE TFRTMLMEDK SGYTTPKTKR VGKFQMADSR KRRKTEDSSS 101: KSVSPEQGNV AVEVDNQDLL SSKAQKCIGR FFYEHCVDLS AVDSPCFKEM MMALGVGQKI PDSHDLNGRL LQEAMKEVQD YVKNIKDSWK ITGCSILLDA 201: WIDPKGHDLV SFVADCPAGP VYLKSIDVSV VKNDVTALLS LVNGLVEEVG VHNVTQIIAC STSGWVGELG KLFSGHDREV FWSVSLSHCF ELMLVKIGKM 301: RSFGDILDKV NTIWEFINNN PSALKIYRDQ SHGKDITVSS SEFEFVKPYL ILKSVFKAKK NLAAMFASSV WKKEEGKSVS NLVNDSSFWE AVEEILKCTS 401: PLTDGLRLFS NADNNQHVGY IYDTLDGIKL SIKKEFNDEK KHYLTLWDVI DDVWNKHLHN PLHAAGYYLN PTSFYSTDFH LDPEVSSGLT HSLVHVAKEG 501: QIKIASQLDR YRLGKDCFNE ASQPDQISGI SPIDWWTEKA SQHPELQSFA IKILSQTCEG ASRYKLKRSL AEKLLLTEGM SHCERKHLEE LAFVHYNLHL 601: QSCKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)