suba logo
AT2G21800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : essential meiotic endonuclease 1A
Curator
Summary (TAIR10)
Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.
Computational
Description (TAIR10)
essential meiotic endonuclease 1A (EME1A); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166); BEST Arabidopsis thaliana protein match is: essential meiotic endonuclease 1B (TAIR:AT2G22140.1); Has 2270 Blast hits to 1760 proteins in 250 species: Archae - 0; Bacteria - 114; Metazoa - 736; Fungi - 365; Plants - 159; Viruses - 22; Other Eukaryotes - 874 (source: NCBI BLink).
Protein Annotations
EC:3.1.22.-eggNOG:ENOG410IFIGeggNOG:ENOG410ZQHKEMBL:AC007019
EMBL:AK228007EMBL:BT006456EMBL:CP002685EMBL:FJ936556
EnsemblPlants:AT2G21800EnsemblPlants:AT2G21800.1entrez:816716GeneID:816716
Genevisible:Q84M98GO:GO:0003677GO:GO:0004519GO:GO:0005634
GO:GO:0006281GO:GO:0006310GO:GO:0007067GO:GO:0046872
GO:GO:0051301GO:GO:0051321hmmpanther:PTHR13451hmmpanther:PTHR13451:SF9
HOGENOM:HOG000030180InParanoid:Q84M98InterPro:IPR006166KEGG:ath:AT2G21800
KO:K10882ncoils:CoilOMA:WRKPPIDPaxDb:Q84M98
Pfam:PF02732Pfam:Q84M98PhylomeDB:Q84M98PIR:C84605
PRIDE:Q84M98PRO:PR:Q84M98ProteinModelPortal:Q84M98Proteomes:UP000006548
RefSeq:NP_001189572.1RefSeq:NP_179771.2SMART:SM00891STRING:3702.AT2G21800.2
TAIR:AT2G21800tair10-symbols:ATEME1Atair10-symbols:EME1AUniGene:At.39521
UniProt:Q84M98
Coordinates (TAIR10) chr2:+:9298196..9301745
Molecular Weight (calculated) 61241.80 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.61
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDFILISDG EDEATPPPSK RARKNRTPTD LNLDTEPSLQ KQPPGSASTP FFLDETPLSD DVTVLKSSFG SGTGASSGRE NNFFGKRVIS LESDSEDSPG
101: PESSKKYEPV YTDSWKKPCR LEFGSSDANS DDDPSWMRRA SFQSSLSKDA IEVDSDHEKE DTGVEKMGRK KQTITSKSTS LSADSLPKKK MSKDEKTRAA
201: EEKKLQKEQE KLQKAASKAE DAEHKKLERE KQKWAKEKDK ALKCIVAWID NKVLEGSFGG LLISGLKEKC ITYHVTTNPI QRSIVWTMTL PEDIAQSLPL
301: GSKIPYVLLL YEAEDFCNLV AKKELLENVY RVRDEYPSYT MCYLTNKLLS YVNKKERVEY KDPVNGCGWR KPPIDEAIAK LSTHYIGVHS RHCVDEAEVA
401: DHVVRLTSSL AHCQVRKKLT RLSVYADGTL MSKNAADKHL IRESIWLKVL VAIPKVQPRY AIAVSKKYPS LKSLLKVYMD PNISVHEKEF LLKDLKVENL
501: VGRDTSVGEA CSKRIYRVLM SLDGTIKTDD VENGAASFTL PPSDLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)