AT5G11780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 37 Blast hits to 37 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3793928..3795983 | ||||||||||||||||||||
| Molecular Weight (calculated) | 57745.10 Da | ||||||||||||||||||||
| IEP (calculated) | 4.91 | ||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQPPICKPRP QSHLEFLKPL LNDSIKQLLL QYRGGRTNFS DFDSIFTRIL NDLPEPPPLE LVWFYSAIRF YSSKLAFRDD SVRLTSCFFQ LIVSFSDSFS 101: GVKKVSLLSP VVYQLSRLVI SRRRDALSLL EGIVSYISMY CVDEPGNEDD DVLMVSGFSF ADLSRVWVVD EVEDNCRVED CLEVFMPFAS EILRKEIDSE 201: SCGVGYLAGI VASQVFLLSL CSRFDLDLGR SELDKDLQES VLQMISGFHS CFFFDVILKM LLEPYLHLTS LMGVVPEDEA FLTEIITEAV IKSVEKLFLN 301: PGNGTSQRSL HLKNIAINWL FLFDKTMASL RRNKDQEKIS MYTNMFSNSL IPYHLINWVI SQGEVIRDAD TLRNLTPASF IEWLVSLEEQ GPRVFNCDHS 401: KNYAKSVIHR SRPDLSIGTT LQKQEEEFDQ DTDMADEQNV SSISILSRNT RKRKEERHNK EGETKVKLFK HRHSNLQENS KFQPFVFSGS LVNGSEVEVS 501: DMEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)