AT5G07810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), HNH endonuclease (InterPro:IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor18 (TAIR:AT1G48310.1); Has 16904 Blast hits to 14939 proteins in 1977 species: Archae - 110; Bacteria - 5677; Metazoa - 3556; Fungi - 3371; Plants - 1315; Viruses - 123; Other Eukaryotes - 2752 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2491412..2498484 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 134326.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1190 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEVSEEQRRR DEATRLAFAE KRKQSFDSSE NPQRQQDFRL AKCRKLDGSN DVCPQEGYRN YEPVRVLSTS VPEKFRVRLE ICSPDSFSVT PVQLQGFRCP 0101: EEQECLRQLR KILSDAIPLH YTQNDDGGKA GVYKIRDYNK VSGCLKRSKS VEVEGVPWKT LAVVEKLSQS YISGKWQPCL PEHYTEEKVE QLIETLPRKL 0201: VNALLPFQLD GLRFGLRRGG RCFIADEMGL GKTLQAIAIA GCFISEGSIL VVCPAVLRFT WAEELERWLP SCLPSDVHLV FGHQDNPAYL PRWPKVVVIS 0301: YKMLQHLRTT MLEREWALLI VDESHHLRCS KKKSDPPEIK TVLDVAEKVK HIILLSGTPS VSRPFDIFHQ INMLWPGLLG KDKYEFAKTY CEVGLVRGIQ 0401: GKIFQDFSKG TRLLELNILL NQTVMIRRLK QHLLTQLPPK RRQIVTILLK KSDIALAMAI VSEAKKQKDG AIAEVTEKSH EPDQNARGSN EAGHVNAENS 0501: DGPNSDKENQ LCGKLSYQQL GIAKLSAFRE WLSLHPLLSG LDYTPEEIDG DRSSTKMVVF AHHHKVLDGI QEFICDKGIG FVRIDGTTLP RDRQLAVQSF 0601: QFSSEVKIAI IGVEAGGVGL DFSAAQNVVF LELPKTPSLL LQAEDRAHRR GQTSAVNVYI FCAKDTMDES NWQNLNKKLH RISSTTDGKY DGKTEIEIGG 0701: ASIFKPAEES SEREVLEGQP SESNTVVADK IVESCDDPGT ETDVSNTIDL KDDMTSQLEI LEVCPFVENG SGSGMRSSGT ISLTMLAQEN QENHKPKNLI 0801: ADDGLVKEVD SSSIFPLIDS LRFEVSQNTG RIHLYSCIPG KDPRPRPHFQ NFRPEEIEAS NPSQGTTKEK NPESITDDPV HVLAILEFMK EWKSLRPIEK 0901: RKLLGKPLQL PLSLELSYLS ESTSHNSEGL LRGGSKRRNT PFSEISIPLP ENAVWIKVNL RSGHQRKEKE YTQAWSMSNE PLCKLCQKPC AGYNAKEPEY 1001: LEDLFCELAC YEDYRTRTSS RYIRQIEHGI CTNCKLDCHQ LVKRLRPLPL EKRRTYINKA APELFARKNL LETLVNDPTE GNAWHADHII PVYQGGGECR 1101: LENMRTLCVA CHADVTAAQC AERKLIRSKA RKQLKNTLNE LRNNPKQKDL SADENTKETD SATNEEEDEL MIEVPGSAYS IDQKINHDAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)