AT3G06520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.897 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : agenet domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 523 Blast hits to 271 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2020284..2021955 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54219.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSDRFWRGG DRVEVERLVS GATAYFPASV VSAPSVRKKL VWVEHESLTV GGSVSVRMKE YVTPTRLRPS PPRELNRRFK ADDEVDVFRD SEGCWVRGNV 101: TTVLEDSRYI VEFKGENRPE IEVDQFNLRL HREWLDGGWV PSLLQQSNFS ESTAQRIKLK IKIKRRDQYE KGALVEVRSE EKAYKGSWYC ARILCLLGDD 201: KYIVEHLKFS RDDGESIPLR DVVEAKDIRP VPPSELSPVV CYEPGVIVDA WFNKRWWTSR VSKVLGGGSN KYSVFIISTG EETTILNFNL RPHKDWINGQ 301: WVIPSKVLTD VPEECYKPPL KKLKSCERAE KVFNNGMEVE VRSDEPGYEA SWFSAKIVSY LGENRYTVEY QTLKTDDERE LLKEEARGSD IRPPPPPLIP 401: KGYRYELYEL VDAWYNEGWW SGRVYKINNN KTRYGVYFQT TDESLEFAYN DLRPCQVWRN GKWSRV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)