AT3G06510.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Glycosyl hydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 27 (TAIR:AT3G60120.1); Has 11582 Blast hits to 10595 proteins in 1458 species: Archae - 144; Bacteria - 8179; Metazoa - 842; Fungi - 193; Plants - 1310; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:2016450..2019533 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 70782.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 622 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MELFALLIKV AGLLATVTVG ANVVSYSRFR RQNLAKFRSP IDESKEVLAD FNSIEHEEGK FFFGLATAPA HAEDDLDDAW LQFAKETPCS AEEAEAADKK 101: ARRKKVKLAV GAITKGLAKN THGKEDKNAA DKPPSKNVAA WHNAPHAEDR LKFWSDPDKE VKLAKDTGVT VFRMGVDWSR IMPVEPTKGI KEAVNYEAVE 201: HYKWILKKVR SNGMKVMLTL FHHSLPPWAA DYGGWKMEKT VDYFMDFTRI VVDSMYDLVD SWVTFNEPHI FTMLTYMCGS WPGNNPDFLE IATSTLPMGV 301: FHRALHWMAV AHSKAYDYIH GKISLKKPLV GVAHHVSFMR PYGLFDIGAV TISNSLTIFP YIDSICEKLD FIGINYYGQE AVCGAGLKLV ETDEYSESGR 401: GVYPDGLYRV LLMFHERYKH LKVPFIVTEN GVSDETDVIR RPYLIEHLLA LYAAMLKGVP VLGYIFWTIS DNWEWADGYG PKFGLVAVDR SHDLARTLRQ 501: SYHLFSKIVK SGKVTRKDRS LAWNELQKAA KAGKLRPFYR GVDNHNLMYA DGLDKPQWRP FVDRDWRFGH YQMDGLQDPL SRVARTLLIW PLIMKKRIRK 601: VKIKHTDDAG LVLHPALASP FD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)