AT5G01770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HEAT repeat ;WD domain, G-beta repeat protein protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutations in this gene have no visible effects on embryo or plant development. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RAPTOR2 (RAPTOR2); FUNCTIONS IN: binding, nucleotide binding; INVOLVED IN: cell growth; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), Regulatory associated protein of TOR (InterPro:IPR004083), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT3G08850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:294539..301773 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 147648.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1336 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALGDLMVSR LSQSSVTVVT NHLYDDDDNC ASSAHDDSRV SIIASPRVAS SSYENLSAAT SMAYLPQTLV LCDLRHDDAS DIVQPPRWRL KERMKTGCVA 0101: LVMCLHITVD PPDVIKISPC ARLECWIDPF SMFPPRRALE AIGQNLSIQY ERWLARARYK VELDPTKDDV RKLCLSCRKY AKTERVLFHY NGHGVPKPTP 0201: NGEIWVYNKN FTQYIPLPVS ELDSWLKTPT IYVFDCSAAR VILNAFAEGE SSGPPKDCIL LAACDVHETL PQSVEFPADV FTSCLTTPIN IALKWFCRRS 0301: LLKEFIDESL IDRIPGRQND RKTLLGELNW IFTAVTDTIA WNVLPRELFQ RLFRQDLLVA SLFRNFLLAE RIMRSGNCTP ISHPMLPPTH QHHMWDAWDM 0401: AAEICLSQLP QFFLDPNTEF QPSSFFTEQL TAFEVWLDHG SEHKKPPEQL PIVLQVLLSQ CHRYRALVLL GRFLDMGPWA VDLALSVGIY PCVVKLLQTT 0501: TIELRQILVF IWTKILALDK SCQVDLVKDR GHIYFIRFLD SSDAFPEQRA MAAFILAVIV DGYKRGQESC LEANLIAVCL GHLEATQLCD PPPEPLFLQW 0601: LCLCLGKLWE DYLEAQIMGR EANASENLIA GHTNLLQVRA AAVFALGTLL DVGFDSGKGV CDEEFDDDEN IVEDIIIKSL LDVVSDGSPL VRTEVAVALA 0701: RFAFGHKQHL KSVADSYWKP QNSLRTSLPS MAKFHDSGTS IVASSDMGSL TRASPDSQPV AREGRISSSL QEPFSGLMQG SPLADDSSLH SDVGIIHDGV 0801: SNGVVHQPRP LDNAIYSQSV LAMFTLAKDP SPRIASLGRR VLSVIGIEQI VAKPSKSNGR PGEAASASHT PLAGLVRSSS WFDMHTGHLP LTFRTPPVSP 0901: PQTSYLTGLR RVCSLELRPH LLGSPDSGLA DPILGVSGSE RSLLPQSTIY NWSCGHFSKP LLGGADANEE IAAQREEKKK FSLEHIAKCQ HSSISGLSNI 1001: PIANWDTKFE TGTKTALLHP FSPIVVAADE NERIRVWNYE EATLLNGFDN NDFPDKGISN LCLVNELDDS LLLVASCNVP TLSRASFAIR IWKDYATKGR 1101: QKLVTGFSSI QGQKPGASGL NAVVDWQQQS GYLYVSGESL SIMVWDLDKE QLVKSMPFES GCSVTALSAS QVHGSQLAAG FADGSVRLYD VRTPDFLVCA 1201: TRPHQRVEKV VGLSFQPGLD PAKIVSASQA GDIQFLDLRR PKETYLTIDA HRGSLTALGV HRHAPIIASG SAKQLIKVFS LKGEQLGIIK YHTSFMGQQI 1301: GPVSCLAFHP YQMLLAAGAA GSFVSLYTHH NTQLPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)