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AT3G15880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WUS-interacting protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WUS-interacting protein 2 (WSIP2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G15750.4); Has 22632 Blast hits to 13797 proteins in 616 species: Archae - 20; Bacteria - 4458; Metazoa - 7628; Fungi - 4973; Plants - 2405; Viruses - 0; Other Eukaryotes - 3148 (source: NCBI BLink).
Protein Annotations
BioGrid:6165eggNOG:ENOG410XP3KeggNOG:KOG0266EMBL:AB017071
EMBL:AK229865EMBL:AK317630EMBL:AY039963EMBL:CP002686
EnsemblPlants:AT3G15880EnsemblPlants:AT3G15880.1entrez:820831ExpressionAtlas:Q27GK7
Gene3D:2.130.10.10GeneID:820831Genevisible:Q27GK7GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0010072hmmpanther:PTHR22847
hmmpanther:PTHR22847:SF499HOGENOM:HOG000237725InParanoid:Q27GK7IntAct:Q27GK7
InterPro:IPR001680InterPro:IPR006594InterPro:IPR006595InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR027728iPTMnet:Q27GK7
OMA:MAYCADGPANTHER:PTHR22847:SF499PaxDb:Q27GK7Pfam:PF00400
Pfam:Q27GK7Pfscan:PS50082Pfscan:PS50294Pfscan:PS50896
Pfscan:PS50897PhylomeDB:Q27GK7PRIDE:Q27GK7PRO:PR:Q27GK7
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294PROSITE:PS50896
PROSITE:PS50897ProteinModelPortal:Q27GK7Proteomes:UP000006548RefSeq:NP_188209.3
RefSeq:NP_851003.2scanprosite:PS00678SMART:SM00320SMART:SM00667
SMART:SM00668SMR:Q27GK7STRING:3702.AT3G15880.2SUPFAM:SSF50978
TAIR:AT3G15880tair10-symbols:TPR4tair10-symbols:WSIP2UniGene:At.26150
UniGene:At.53160UniGene:At.66498UniProt:Q27GK7
Coordinates (TAIR10) chr3:-:5364792..5371869
Molecular Weight (calculated) 124110.00 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.33
Length 1135 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)