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AT5G16960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.588
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: leaf whorl, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G16960-MONOMEReggNOG:COG2130eggNOG:KOG1196EMBL:AL391141
EMBL:CP002688EnsemblPlants:AT5G16960EnsemblPlants:AT5G16960.1entrez:831559
Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:831559GO:GO:0008270
GO:GO:0016491Gramene:AT5G16960.1hmmpanther:PTHR11695hmmpanther:PTHR11695:SF564
InterPro:IPR002085InterPro:IPR011032InterPro:IPR013149InterPro:IPR016040
InterPro:IPR020843KEGG:ath:AT5G16960KO:K08070OMA:AVGWEEY
PANTHER:PTHR11695Pfam:PF00107Pfam:PF16884PhylomeDB:Q9LFK5
PIR:T51551Proteomes:UP000006548RefSeq:NP_197198.1SMART:SM00829
SMR:Q9LFK5STRING:3702.AT5G16960.1SUPFAM:SSF50129SUPFAM:SSF51735
TAIR:AT5G16960UniGene:At.31614UniProt:Q9LFK5
Coordinates (TAIR10) chr5:-:5574537..5575884
Molecular Weight (calculated) 38135.20 Da
IEP (calculated) 7.52
GRAVY (calculated) 0.01
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTINKQVV LLDYVTGFAK ESDLVITSTT IDLRVLKGSM TALVKNLYLS CDPYMRNRMR KPDPLSPATA QSFTPGKPIS GFGVSKVIDS GHSDYEEGDL
101: IWGAVGWEEY SVITPIPNLH FKIHHTNFPL SYYTGLLGMP GMTAYVGFYE ICTPKKGDTV FVSAASGAVG QLVGQFAKLM GCYVVGSAGS KEKVDLLKNK
201: FGFDDAFNYK EEHNLIGALK RCFPEGIDIY FENVGGKMLD AVILNMRPHG RIAACGMISQ YNLKNPEGIY GLSLITYKRI RIEGFNCFDY FHKYSEFLEF
301: VVPYIKEGKI KYVEDVADGL ESAPAALVGL FHGKNVGKQL VVVSPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)