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AT4G19540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IND1(iron-sulfur protein required for NADH dehydrogenase)-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IND1(iron-sulfur protein required for NADH dehydrogenase)-like (INDL); LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ParA/MinD (InterPro:IPR019591); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT3G24430.1); Has 13193 Blast hits to 13164 proteins in 2587 species: Archae - 550; Bacteria - 7572; Metazoa - 442; Fungi - 431; Plants - 201; Viruses - 0; Other Eukaryotes - 3997 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0489eggNOG:KOG3022EMBL:AK229020EMBL:AL021768
EMBL:AL161551EMBL:CP002687EnsemblPlants:AT4G19540EnsemblPlants:AT4G19540.1
entrez:827696Gene3D:3.40.50.300GeneID:827696GO:GO:0005739
Gramene:AT4G19540.1HAMAP:MF_02040hmmpanther:PTHR23264hmmpanther:PTHR23264:SF31
HOGENOM:HOG000079916InterPro:IPR019591InterPro:IPR027417KEGG:ath:AT4G19540
KO:K03593OMA:TMPFVWLPANTHER:PTHR23264Pfam:PF10609
PhylomeDB:O49472PIR:T06147Proteomes:UP000006548Reactome:R-ATH-6799198
RefSeq:NP_193689.1SMR:O49472STRING:3702.AT4G19540.1SUPFAM:SSF52540
TAIR:AT4G19540tair10-symbols:INDLUniGene:At.32807UniProt:O49472
Coordinates (TAIR10) chr4:+:10657517..10659094
Molecular Weight (calculated) 33428.00 Da
IEP (calculated) 8.72
GRAVY (calculated) 0.03
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVALLRSL RRRELHAAHI SAYKFSSASA GGRTTELRLH GVKDIIAVAS GKGGVGKSST AVNLAVALAN KCELKIGLLD ADVYGPSVPI MMNINQKPQV
101: NQDMKMIPVE NYGVKCMSMG LLVEKDAPLV WRGPMVMSAL AKMTKGVDWG DLDILVVDMP PGTGDAQISI SQNLKLSGAV IVSTPQDVAL ADANRGISMF
201: DKVRVPILGL VENMSCFVCP HCNEPSFIFG KEGARRTAAK KGLKLIGEIP LEMSIREGSD EGVPVVVSSP GSIVSKAYQD LAQNVVKGLK ELRENPDNEI
301: QMKLNVPHSS HSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)