AT5G24830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G63080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8531226..8533266 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66540.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 593 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALLISCGEV TSSQFTVFRL LNQSLDFVSD NVSRLLAPIF TNLRDFEMRL SCIERPPSIS GNHSHLCTEK WFSDQKDYDQ KEDPEAIFNV LDYILKSSLD 101: RLASLRESVC QTKSFDYDDC LSIHSSIMRD LCLQGKLDAA LWLRKKMIYS GVIPGLITHN HLLNGLCKAG YIEKADGLVR EMREMGPSPN CVSYNTLIKG 201: LCSVNNVDKA LYLFNTMNKY GIRPNRVTCN IIVHALCQKG VIGNNNKKLL EEILDSSQAN APLDIVICTI LMDSCFKNGN VVQALEVWKE MSQKNVPADS 301: VVYNVIIRGL CSSGNMVAAY GFMCDMVKRG VNPDVFTYNT LISALCKEGK FDEACDLHGT MQNGGVAPDQ ISYKVIIQGL CIHGDVNRAN EFLLSMLKSS 401: LLPEVLLWNV VIDGYGRYGD TSSALSVLNL MLSYGVKPNV YTNNALIHGY VKGGRLIDAW WVKNEMRSTK IHPDTTTYNL LLGAACTLGH LRLAFQLYDE 501: MLRRGCQPDI ITYTELVRGL CWKGRLKKAE SLLSRIQATG ITIDHVPFLI LAKKYTRLQR PGEAYLVYKK WLATRNRGVS CPSILNHMHT EEQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)