AT1G15160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15150.1); Has 7342 Blast hits to 7269 proteins in 1785 species: Archae - 88; Bacteria - 4667; Metazoa - 149; Fungi - 332; Plants - 1329; Viruses - 0; Other Eukaryotes - 777 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5215475..5217545 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52768.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.69 | ||||||||||||||||||||||||||||||||||||
| Length | 487 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDAESTTKD PVDRVEKVTW RDLQDGSFTA ELKKLICFAA PMAAVVITQS MLQIITMVIV GHLGRLSLAS ASFAISFCNV TGFSFIMGLS CALDTLSGQA 101: YGAKLYRKLG VQAYTAMFCL TLVCLPLSLL WFNMGKLLVI LGQDPSIAHE AGRFAAWLIP GLFAYAVLQP LTRYFKNQSL ITPLLITSCV VFCLHVPLCW 201: LLVYKSGLDH IGGALALSLS YWLYAIFLGS FMYFSSACSE TRAPLTMEIF EGVREFIKYA LPSAAMLCLE WWSYELIILL SGLLPNPQLE TSVLSVCLQT 301: LSMTYSIPLA IAAAASTRIS NELGAGNSRA AHIVVYAAMS LAVVDALMVG TSLLAGKNLL GQVFSSDKNT IDYVAKMAPL VSISLILDSL QGVLSGVASG 401: CGWQHIGAYI NFGAFYLWGI PIAASLAFWV HLKGVGLWIG IIAGAVLQTL LLALVTGCIN WENQAREARK RMAVAHESEL TESELPF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)