AT1G15165.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 427 Blast hits to 408 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5217719..5220067 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37881.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||
| Length | 329 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTLATPSPP CLSCSMFSHV RFCRNSRVVS TAAVVSPALS SSNAVNLEIC VAATVLTPLT PLLGLYFGSQ AHWQLNLFGE HIKGFVGIIF CPRRICPLLA 101: MPKLHRDVCA RNYLHFITRC GRSSCRWKLQ DLGVNPGFKP CVRYIIHLRK QRTFFNTVLS HHWGCYTVEI EKPKYACMKS LRRMEDIVPR SSGFQLWWNV 201: VELLLDQLWW RRHALKKLID WESVEEDKGK DSIVAYILHL MKKKSGQIFI PPEEQISLQL MRDPVIVASG QTYERVCVEK WFCDGKLLPQ YSEAAPTSFP 301: DSQLLCYKSD CELVSAEWDH CIIFCPKYF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)