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AT5G04050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-directed DNA polymerase (reverse transcriptase)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-directed DNA polymerase (reverse transcriptase); FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G74350.1); Has 3461 Blast hits to 3086 proteins in 1121 species: Archae - 3; Bacteria - 2166; Metazoa - 4; Fungi - 43; Plants - 1152; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3344eggNOG:ENOG410IPYDEMBL:CP002688EnsemblPlants:AT5G04050
EnsemblPlants:AT5G04050.1entrez:830284ExpressionAtlas:F4KI47GeneID:830284
GO:GO:0003964GO:GO:0006397Gramene:AT5G04050.1hmmpanther:PTHR33642
hmmpanther:PTHR33642:SF1InterPro:IPR024937ncoils:CoilPaxDb:F4KI47
Pfam:PF01348PRIDE:F4KI47ProteinModelPortal:F4KI47Proteomes:UP000006548
RefSeq:NP_196025.5STRING:3702.AT5G04050.2TAIR:AT5G04050UniGene:At.33182
UniProt:F4KI47
Coordinates (TAIR10) chr5:+:1096092..1097894
Molecular Weight (calculated) 69604.00 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.26
Length 600 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLRLRVHSF YNRGISFLVS SSLRNLSTAS SLFLNSDQTI TEPLVKSELE ALVLKQYSHG KFYSLVKNAV SLPCVLLAAC QNLSLSANSS GDLADRVSRR
101: FSIEEMGREI REGRFDIRSC CVEFISSSLV LPNLKLKVLI EAIRMVLEIV YDDRFATFSY GGRVGMGRHT AIRYLKNSVE NPRWWFRVSF AREMFEERNV
201: DILCGFVGEK INDVMLIEMI KKLFEFGILK IELGGCNSGR GFPQECGLCS ILINVYFDGL DKEIQDLRLK MKVKNPRVGT GDEESTGNVF FKPVNIYAVR
301: YLDEILVITS GSKMLTMDLK KRIVDILEQR LELRVDRLNT SIHSAVSEKI NFLGMYLQAV PPSVLRPPKS EKAVRAMKKY QRQKDVRKLE LRNARERNRK
401: TLGLKIFRHV LKKIKQSNGF KFEGEIENEV RDIFQSWGEE VMQDFMGSLE ERWKWHWLLT RGDFLSLRHI REKLPQDLID AYDEFQEQVD KHLAPTQAKK
501: VLEDEERRVE EEEEQRYAER TVEDLTKLCM KVSAPEELVR KAIKLVGFTN SMGRPRPIIH LVTLEDSDII KWYAGVGRKW LDFFCCCHNY KMVKSLVRII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)