AT3G48810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 54952 Blast hits to 14329 proteins in 303 species: Archae - 3; Bacteria - 55; Metazoa - 756; Fungi - 902; Plants - 51480; Viruses - 0; Other Eukaryotes - 1756 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18097048..18099027 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74191.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYLKEGCSLL LKVQKPLIPF VLNTNLNVNH LLTESPNHAE IKELDVVKRL RQESCVPLAL HFFKSIANSN LFKHTPLTFE VMIRKLAMDG QVDSVQYLLQ 101: QMKLQGFHCS EDLFISVISV YRQVGLAERA VEMFYRIKEF GCDPSVKIYN HVLDTLLGEN RIQMIYMVYR DMKRDGFEPN VFTYNVLLKA LCKNNKVDGA 201: KKLLVEMSNK GCCPDAVSYT TVISSMCEVG LVKEGRELAE RFEPVVSVYN ALINGLCKEH DYKGAFELMR EMVEKGISPN VISYSTLINV LCNSGQIELA 301: FSFLTQMLKR GCHPNIYTLS SLVKGCFLRG TTFDALDLWN QMIRGFGLQP NVVAYNTLVQ GFCSHGNIVK AVSVFSHMEE IGCSPNIRTY GSLINGFAKR 401: GSLDGAVYIW NKMLTSGCCP NVVVYTNMVE ALCRHSKFKE AESLIEIMSK ENCAPSVPTF NAFIKGLCDA GRLDWAEKVF RQMEQQHRCP PNIVTYNELL 501: DGLAKANRIE EAYGLTREIF MRGVEWSSST YNTLLHGSCN AGLPGIALQL VGKMMVDGKS PDEITMNMII LAYCKQGKAE RAAQMLDLVS CGRRKWRPDV 601: ISYTNVIWGL CRSNCREDGV ILLERMISAG IVPSIATWSV LINCFILDDI VRAHDQFTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)