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AT1G12700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP binding;nucleic acid binding;helicases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP binding;nucleic acid binding;helicases; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 84744 Blast hits to 32036 proteins in 2584 species: Archae - 123; Bacteria - 11324; Metazoa - 2691; Fungi - 2451; Plants - 63733; Viruses - 4; Other Eukaryotes - 4418 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:FM211274EnsemblPlants:AT1G12700
EnsemblPlants:AT1G12700.1entrez:837825ExpressionAtlas:C0MHR3Gene3D:1.25.40.10
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF416InterPro:IPR002885InterPro:IPR011990
PaxDb:C0MHR3PaxDb:P0C7Q7Pfam:P0C7Q7Pfam:PF00271
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfscan:PS51194
Pfscan:PS51375PROSITE:PS51375STRING:3702.AT1G12700.1TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniProt:C0MHR3UniProt:C0MHR4UniProt:P0C7Q7
Coordinates (TAIR10) chr1:-:4323722..4326227
Molecular Weight (calculated) 82400.40 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.00
Length 735 amino acids
Sequence (TAIR10)
(BLAST)
001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS AMKRLTLRYC
601: LSKGSKSRQD LLELSGSEKI RLSSLTFVKM FPCNTITTSL NVNTIEARGM NSAELNRDLR KLRRSSVLKK FKNRDVRVLV TNELLTWGLE DAECDLMVDL
701: ELPTDAVHYA HRAGRMRRPG RKMTVVTVCE ESQVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)