AT2G28050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT2G32630.1); Has 27131 Blast hits to 10367 proteins in 260 species: Archae - 1; Bacteria - 82; Metazoa - 143; Fungi - 90; Plants - 26257; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11938265..11939653 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52933.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTPQCFLKTL KTAKQTYTFS IYKLLLNSSS INQTLASPET PLSDLNLSTL RRILSDPDIK SWKCISLFNF ILENPSLFSF QPDLRTHLSL TFRVLSERRF 101: SYAKELLKPV AIDDILRYPF NVIVSSVIDE CGCEKKVVGR FFNSMIMVYS DNGKFSEVVE VFEYMKNNEV KIDEKTCTLH LLNLKRCDQM ELARDFFSLM 201: VESGIDVVTV YSLTVVVTVL CCNGEITRAR ELVEEMGLVK GVKANIVTFK SMIGCCVKRW DFEELDLVLK LMEKESVMLD LDSYKVLIDG FTSYGKVEEA 301: ERLVLMMHDK KLRVESYLYN LIMNGYSRFG LVEKVIELYS EMSSRGVTPN KDTYWVLMNG LCKAGKVCEA MSFLNELRVN EFEIDEEMYS TLSEECYRVG 401: MIDKSLEVVA EMIRDGFIPG ATICERLADS LFEVNRKEAQ MLITIVVKCG IKPKSCSQYG LK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)