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AT4G19900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.958
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha 1,4-glycosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha 1,4-glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, Golgi stack; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase, DXD sugar-binding region (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein (TAIR:AT2G38152.1); Has 54113 Blast hits to 14510 proteins in 385 species: Archae - 4; Bacteria - 200; Metazoa - 877; Fungi - 767; Plants - 50641; Viruses - 0; Other Eukaryotes - 1624 (source: NCBI BLink).
Protein Annotations
CAZy:GT32eggNOG:ENOG4111PD8eggNOG:KOG1928EMBL:AL021637
EMBL:AL161551EMBL:BX836496EMBL:BX841196EMBL:CP002687
EnsemblPlants:AT4G19900EnsemblPlants:AT4G19900.1entrez:827735ExpressionAtlas:P0C8Q4
GeneID:827735Gramene:AT4G19900.1hmmpanther:PTHR12042hmmpanther:PTHR12042:SF13
HOGENOM:HOG000242382InterPro:IPR007577InterPro:IPR007652InterPro:IPR029044
iPTMnet:P0C8Q4KEGG:ath:AT4G19900ncoils:CoilOMA:PQLCAVA
PaxDb:P0C8Q4Pfam:P0C8Q4Pfam:PF04488Pfam:PF04572
PhylomeDB:P0C8Q4PIR:F85225PRIDE:P0C8Q4PRO:PR:P0C8Q4
ProteinModelPortal:P0C8Q4Proteomes:UP000006548RefSeq:NP_193724.2SUPFAM:SSF53448
TAIR:AT4G19900TMHMM:TMhelixUniGene:At.43825UniGene:At.75504
UniProt:P0C8Q4UniProt:W8Q6J5
Coordinates (TAIR10) chr4:-:10789144..10791433
Molecular Weight (calculated) 73494.00 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.58
Length 644 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRSRRSRSR HGAQACAVMS AVLLLASVSL LYTRLSLFSS HSPNHLRSGS SEDTVLFPDS VLVSDSDVET TGGGGRGSTT STEDRIDEHD DAIEDDGVSN
101: EEDENQDAEQ EQEVDLNRNK AASSSGFYFD HVNGVIRRAF NKRSIDEWDY DYTGFSIDSD SSGDKSSRAA FGSDDVPLDE SIRRKIVEVT SVEDALLLKS
201: GKKVSPLRQG WGDWFDKKGD FLRRDRMFKS NIETLNPLNN PMLQDPDSVG NTGLTRGDKV VQKWRLNQIK RNPFMAKKPL SVVSEKKEPN EFRLLSSVGE
301: IKRGERKTLD NDEKIEREEQ KNVESERKHD EVTEHMYADG TKWGYYPGIE PSLSFSDFMD SFFRKEKCSM RVFMVWNSPG WMFSVRHQRG LESLLSQHRD
401: ACVVVFSETV ELDFFRNSFV KDSYKVAVAM PNLDELLQDT PTHVFASVWF DWRKTKFYPT HYSELVRLAA LYKYGGVYLD SDVIVLGSLS SLRNTIGMED
501: QVAGESLNGA VMSFEKKSPF LLECLNEYYL TYDDKCLRCN GADLLTRVAK RFLNGKNRRM NQQELNIRPS SVFFPINSQQ ITNYFAYPAI EDERSQQDES
601: FKKILNESLT FHFWNSVTSS LIPEPESLVA KFLDHSCIRC SDVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)