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AT3G16110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24970193 (2013): endoplasmic reticulum
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PDI-like 1-6
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).
Computational
Description (TAIR10)
PDI-like 1-6 (PDIL1-6); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-5 (TAIR:AT1G52260.1); Has 9564 Blast hits to 7390 proteins in 1532 species: Archae - 71; Bacteria - 3133; Metazoa - 2543; Fungi - 813; Plants - 1159; Viruses - 1; Other Eukaryotes - 1844 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G16110-MONOMEREC:5.3.4.1eggNOG:COG0526eggNOG:KOG0190
EMBL:AB012247EMBL:AK221388EMBL:BT015349EMBL:BT015798
EMBL:CP002686EnsemblPlants:AT3G16110EnsemblPlants:AT3G16110.1entrez:820856
Gene3D:3.40.30.10GeneID:820856Genevisible:Q66GQ3GO:GO:0003756
GO:GO:0005783GO:GO:0005788GO:GO:0006457GO:GO:0034976
GO:GO:0045454Gramene:AT3G16110.1hmmpanther:PTHR18929hmmpanther:PTHR18929:SF59
HOGENOM:HOG000241706InParanoid:Q66GQ3InterPro:IPR012336InterPro:IPR013766
iPTMnet:Q66GQ3KEGG:ath:AT3G16110KO:K09580ncoils:Coil
OMA:KDMAKFIPaxDb:Q66GQ3Pfam:PF00085Pfam:PF13848
Pfam:Q66GQ3Pfscan:PS51352PhylomeDB:Q66GQ3PRIDE:Q66GQ3
PRO:PR:Q66GQ3PROSITE:PS00014PROSITE:PS51352ProteinModelPortal:Q66GQ3
Proteomes:UP000006548RefSeq:NP_188232.2SMR:Q66GQ3STRING:3702.AT3G16110.1
SUPFAM:SSF52833TAIR:AT3G16110tair10-symbols:ATPDI4tair10-symbols:ATPDIL1-6
tair10-symbols:PDI4tair10-symbols:PDIL1-6TMHMM:TMhelixUniGene:At.50187
UniProt:Q66GQ3
Coordinates (TAIR10) chr3:-:5460955..5463666
Molecular Weight (calculated) 59573.90 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.20
Length 534 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)