AT4G20740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11126151..11128334 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82434.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.09 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 727 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSPKPPNLS DKSLKPNFFH GHRKPSQNRP TVYGGLFSNR QSIPRVSPQP QSNSLAHRTP FDLRKWDPET HLPPPSPPSH STVISAASER LSPIARFVLD 101: AFRKNRNHWG PSVVSELNKL RRVTPSIVAE VLKLGNDAAV AAKFFHWAGK QKGYKHDFAA YNAFAYCLNR NGHFRAADQL PELMDSQGRP PSEKQFEILI 201: RMHADNRRGL RVYYVYEKMK KFGFKPRVFL YNRIMDALVK NGYFDLALAV YEDFKEDGLV EESTTFMILV KGLCKAGRIE EMLEILQRMR ENLCKPDVFA 301: YTAMIKTLVS EGNLDASLRV WDEMRRDEIK PDVMAYGTLV VGLCKDGRVE RGYELFMEMK GKQILIDREI YRVLIEGFVA DGKVRSACNL WEDLVDSGYI 401: ADIGIYNAVI KGLCSVNQVD KAYKLFQVAI EEELEPDFET LSPIMVAYVV MNRLSDFSNV LERIGELGYP VSDYLTQFFK LLCADEEKNA MALDVFYILK 501: TKGHGSVSVY NILMEALYKM GDIQKSLSLF YEMRKLGFEP DSSSYSIAIC CFVEKGDVKA ACSFHEKIIE MSCVPSIAAY LSLTKGLCQI GEIDAVMLLV 601: RECLGNVESG PMEFKYALTV CHVCKGSNAE KVMKVVDEMN QEGVFINEVI YCAIISGMSK HGTIKVAREV FTELKKRKVM TEADMVVYEE MLIEQTKKKT 701: ADLVLSGIKF FGLESKLRAK GCRLLDN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)