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AT1G65070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA mismatch repair protein MutS, type 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA mismatch repair protein MutS, type 2; FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, maintenance of fidelity involved in DNA-dependent DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, type 2 (InterPro:IPR005747), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein MutS, type 2 (TAIR:AT5G54090.1); Has 13239 Blast hits to 13226 proteins in 2712 species: Archae - 194; Bacteria - 9435; Metazoa - 644; Fungi - 752; Plants - 359; Viruses - 3; Other Eukaryotes - 1852 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1193eggNOG:ENOG410IDZ8EMBL:CP002684EnsemblPlants:AT1G65070
EnsemblPlants:AT1G65070.1entrez:842815ExpressionAtlas:F4I9U0Gene3D:3.40.50.300
GeneID:842815GO:GO:0004519GO:GO:0005524GO:GO:0006298
GO:GO:0016887GO:GO:0030983GO:GO:0045910Gramene:AT1G65070.1
hmmpanther:PTHR11361hmmpanther:PTHR11361:SF14InterPro:IPR000432InterPro:IPR005747
InterPro:IPR007696InterPro:IPR027417ncoils:CoilPANTHER:PTHR11361:SF14
PaxDb:F4I9U0Pfam:PF00488PIRSF:PIRSF005814PRIDE:F4I9U0
PROSITE:PS00486ProteinModelPortal:F4I9U0Proteomes:UP000006548RefSeq:NP_176687.1
scanprosite:PS00486SMART:SM00533SMART:SM00534SMR:F4I9U0
STRING:3702.AT1G65070.2SUPFAM:SSF48334SUPFAM:SSF52540TAIR:AT1G65070
UniGene:At.35928UniProt:F4I9U0
Coordinates (TAIR10) chr1:-:24173132..24176244
Molecular Weight (calculated) 94580.30 Da
IEP (calculated) 7.43
GRAVY (calculated) -0.33
Length 857 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQF FVVPDNCTDK HERARQCVAN
801: AKRTSADSNV KEHIGSKRNA GGRSGSPARH GHLGKRLGLD PIYYSWNGGR HYKGASA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)