suba logo
AT3G57190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peptide chain release factor, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescent 109 (TAIR:AT5G36170.2); Has 13500 Blast hits to 13496 proteins in 2706 species: Archae - 0; Bacteria - 9313; Metazoa - 113; Fungi - 108; Plants - 181; Viruses - 0; Other Eukaryotes - 3785 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1186eggNOG:ENOG410IPQ8EMBL:AL137080EMBL:AY128374
EMBL:BT008450EMBL:CP002686EnsemblPlants:AT3G57190EnsemblPlants:AT3G57190.1
entrez:824886Gene3D:3.30.160.20GeneID:824886Genevisible:F4J264
GO:GO:0003730GO:GO:0009507GO:GO:0009570GO:GO:0009658
GO:GO:0016149GO:GO:0040008GO:GO:0043022GO:GO:0043488
GO:GO:0043565Gramene:AT3G57190.1hmmpanther:PTHR11075hmmpanther:PTHR11075:SF52
HOGENOM:HOG000074814InterPro:IPR000352InterPro:IPR005139InterPro:IPR014720
KEGG:ath:AT3G57190OMA:GMYTSWAPaxDb:F4J264Pfam:F4J264
Pfam:PF00472Pfam:PF03462PIR:T45797PRIDE:F4J264
PRO:PR:F4J264ProteinModelPortal:F4J264Proteomes:UP000006548RefSeq:NP_191278.2
SMART:SM00937SMR:F4J264STRING:3702.AT3G57190.1SUPFAM:SSF75620
TAIR:AT3G57190UniGene:At.34857UniProt:F4J264
Coordinates (TAIR10) chr3:+:21166468..21168198
Molecular Weight (calculated) 45971.40 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.30
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKIIGGCC SWRRFYRKRT SSRFLIFSVR ASSSMDDMDT VYKQLGLFSL KKKIKDVVLK AEMFAPDALE LEEEQWIKQE ETMRYFDLWD DPAKSDEILL
101: KLADRAKAVD SLKDLKYKAE EAKLIIQLGE MDAIDYSLFE QAYDSSLDVS RSLHHYEMSK LLRDQYDAEG ACMIIKSGSP GAKSQIWTEQ VVSMYIKWAE
201: RLGQNARVAE KCSLLSNKSG VSSATIEFEF EFAYGYLLGE RGVHRLIISS TSNEECSATV DIIPLFLRAS PDFEVKEGDL IVSYPAKEDH KIAENMVCIH
301: HIPSGVTLQS SGERNRFANR IKALNRLKAK LLVIAKEQKV SDVNKIDSKN ILEPREETRS YVSKGHKMVV DRKTGLEILD LKSVLDGNIG PLLGAHISMR
401: RSIDAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)