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AT1G13810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Restriction endonuclease, type II-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G67660.1); Has 316 Blast hits to 315 proteins in 62 species: Archae - 0; Bacteria - 48; Metazoa - 55; Fungi - 0; Plants - 63; Viruses - 14; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8HZeggNOG:ENOG410Z5VAEMBL:AY735513EMBL:CP002684
EnsemblPlants:AT1G13810EnsemblPlants:AT1G13810.1entrez:837942Gene3D:3.90.320.10
GeneID:837942GO:GO:0003677GO:GO:0004519Gramene:AT1G13810.1
InterPro:IPR011335InterPro:IPR011604InterPro:IPR019080KEGG:ath:AT1G13810
merops:S33.A75OMA:YIVYESKPfam:PF09588PhylomeDB:Q5XVK9
Proteomes:UP000006548RefSeq:NP_172836.1SMR:Q5XVK9SUPFAM:SSF52980
TAIR:AT1G13810UniGene:At.50929UniProt:Q5XVK9
Coordinates (TAIR10) chr1:+:4734088..4735164
Molecular Weight (calculated) 35496.00 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.60
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRRVFYKRA RDDLSYCHRL LHIPYNEPEP DSKAISEIVG IVSKKEEAVV VTEPTHHWRK NWEDLRKNRL TASNFARAIG FSPDGRRNLW LEKIGAAKPF
101: AGNRATFWDI ENEVEALERY NELTGNEILI PEFVVYKNGE SPEENWLGAS PDGVINVVKD GVTSCGVLEV KCPFDNRDNS KVYPWKKVPY NCVPQLQGLM
201: EIVDTDWLDL YCWTRNGSSL FRVWRDTAFW EDMKPALFDF WQNHVLPARE IYNNFDIKDP QVKLREFKPK HWHEDCKKIM RGAERISANA NRLFYEIDGN
301: LVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)