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AT5G35930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Pyrrolo-quinoline quinone beta-propeller repeat (InterPro:IPR018391), Pyrrolo-quinoline quinone repeat (InterPro:IPR002372), AMP-dependent synthetase/ligase (InterPro:IPR000873), Phosphopantetheine attachment site (InterPro:IPR006162), Acyl carrier protein-like (InterPro:IPR009081), AMP-binding, conserved site (InterPro:IPR020845), Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT3G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1020eggNOG:COG1520eggNOG:KOG1178eggNOG:KOG4649
EMBL:AB025602EMBL:AY099772EMBL:CP002688EnsemblPlants:AT5G35930
EnsemblPlants:AT5G35930.1entrez:833582Gene3D:1.10.1200.10Gene3D:2.140.10.10
GeneID:833582Genevisible:F4K1G2GO:GO:0003824Gramene:AT5G35930.1
HOGENOM:HOG000030080InParanoid:F4K1G2InterPro:IPR000873InterPro:IPR002372
InterPro:IPR006162InterPro:IPR009081InterPro:IPR011047InterPro:IPR018391
InterPro:IPR020845InterPro:IPR025110InterPro:IPR027295KEGG:ath:AT5G35930
KO:K00142OMA:WEKLQYLPaxDb:F4K1G2Pfam:F4K1G2
Pfam:PF00501Pfam:PF00550Pfam:PF13193Pfam:PF13360
Pfscan:PS50075PRIDE:F4K1G2PRO:PR:F4K1G2PROSITE:PS00012
PROSITE:PS00455PROSITE:PS50075ProteinModelPortal:F4K1G2Proteomes:UP000006548
RefSeq:NP_198442.2scanprosite:PS00012scanprosite:PS00455SMART:SM00564
SMR:F4K1G2STRING:3702.AT5G35930.1SUPFAM:SSF47336SUPFAM:SSF50998
SUPFAM:SSF56801TAIR:AT5G35930UniGene:At.30571UniProt:F4K1G2
Coordinates (TAIR10) chr5:-:14067197..14074404
Molecular Weight (calculated) 115600.00 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.05
Length 1040 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPKVVALYMP PSVEYVISVF SVLRCGEAFL PLDPSWPRER VLSLISSSNI SLVIACGLSS VESHWLVERN VCPVLLFSMD EKLSVETGCS SFVWPCKKER
0101: QRKFCYLMYT SGSTGKPKGV CGTEQGLLNR FLWMQELYPV VGEQRFAFKT SVGFIDHIQE FLGAILSSTA LVIPPFTLLK ENMISIIDFL EEYSISRLLA
0201: VPSMIRAILP TLQHRGHNNK LQSCLKLVVL SGEPFPVSLW DSLHSLLPET CFLNLYGSTE VSGDCTYFDC SELPRLLKTE EIGSVPIGKS ISNCKVVLLG
0301: DEDKPYEGEI CVSGLCLSQG YMHSSIESEG YVKLHNNSLC NHLTNDCGSQ LYYRTGDYGR QLSSGDLIFI GRRDRTVKLN GKRMALEEIE TTLELNPDIA
0401: EAVVLLSRDE TELASLKAFV VLNKESNSSD GIIFSIRNWM GGKLPPVMIP NHFVLVEKLP LTSSGKVDYE ALARLKCPTT GAQDMMQSNG TNSLLQNIKK
0501: AVCDALLVKE VSDDDDFFAI GGDSLAAAHL SHSLGIDMRL IYQFRSPSRL LIYLSEKEGK LREDMQHNTT QKLDHKIESQ NGNGLVSRTV PLHSGVTSGP
0601: TPSKLQCEKN NSPKRLKIDY EKFSPKRMKE NKLWDSGFSQ IQCAFSRCNK VHSPESCSNE EANREYWSLE IPRNQMVSMQ EIWKVHMESC VDASPLVVLK
0701: DSKTYLFIGS HSRKFSCIDA KSGSMYWETI LEGRIEGSAM VVGDFSQVVI GCYKGKLYFL DFSTGSLCWK FQACGEIKCQ PVVDTSSQLI WCGSHDHTLY
0801: ALDYRSQCCV YKLQCGGSIF ASPAIDEGHS SLYVASTSGR VIAVSIKDSP FHTLWLFELE APIFGSLCIT PSTQNVICCL VDGQVIAMSP SGTIIWRYRT
0901: GGPIFAGPCM SHVLPSQVLV CCRNGCVYSL EPESGCLVWE DNIGDPITAS AYIDENLHFE SHELLASDRL VTVCSSSGRV HVLRVRPSIL SRDSHDSKVG
1001: EITRMELQAD IFSSPVMIGG RIFVGCRDDY VHCLSLESCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)