AT2G42640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitogen activated protein kinase kinase kinase-related | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitogen activated protein kinase kinase kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Mitogen activated protein kinase kinase kinase-related (TAIR:AT3G58640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17758532..17763708 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86074.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.22 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||
| Length | 781 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAKCCRGHR GSVVESNGSV ILSLADLEVQ ATDLREMTVV EARDAAGPSE PRPPSPTLRP SEVEETSEPV CQGSLVETSN TDDAGPSEPN PPSPTLRPSE 101: VEKIYVPVCQ GSLAETSNLD QDGVSSYEAS NIFWSTGSLS DPIPSGFYTV IPVERLMHFK SIPTLEEINA LGEDRLKADA IFVDLKNDIQ LVLIKEFVIK 201: LVTGLDSDKV IKKIAGLVAN IYKRKTLQSP ARTLQYFDVQ GFTLLGQIKH GSCRARAILF KVLADAVGLD SKLVMGFPTD LRFSASIDSY NHISAVVELN 301: NVEMLVDLKR CPGQLKPFSP KAVYMAHISM AWQPDFVDNN PCASPLEPNS PMERSGPPSA LQSGLSRSLG EPNIATEVLR RKVIKEPPPA DFSGNSGAAE 401: SESKRTNGRC MNTPDLNNDI ARATMMQSDL LKERGVDDSS PYSPDEKNVS GFQLDSHDLV SGECSTVYPR KSISLPSSPR SYQIQLSERS EHSPQEISHI 501: WNEVLESPMF QNKPLLPFEE WNIDFSKLKV GASVGSGTSG VVCRGVWNKT EVAIKIFLGQ QLTAENMKVF CNEISILSRL QHPNVILLLG ACTKPPQLSL 601: VTEYMSTGSL YDVIRTRKKE LSWQRKLKIL AEICRGLMYI HKMGIVHRDL TSANCLLNKS IVKICDFGLS RRMTGTAVKD TEAAGTPEWM APELIRNEPV 701: TEKSDIFSFG VIMWELSTLS KPWKGVPKEK VIHIVANEGA RLKIPEGPLQ KLIADCWSEP EQRPSCKEIL HRLKTCEIPI C |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)