AT3G07060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NHL domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1974 (emb1974); CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2232760..2236913 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87030.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||
| Length | 774 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNRSLHLKK ISWLSSRILS DNVHGRFRRS ITTPATCLAP SLDGDMNIGS KTLVEQRFSR GFASVRRVSR ASSSSSSSPS SPHVDLLSFI KASLDKLEGP 101: SHHWLNRDFG NKQLFKDKGT YVVLAGHLLD GTSDLSGFFE KLKLLQQRSP GVCFMGIHFS DQARIADDRT ALAELILKEY LTFPVLLSEK EFPKTSGEVR 201: YIVFKDFKNP LIYEEKDLDI ASVVKALDSL LTQDTEKSKS VRLFTNTWSK QAEAIKESHF PSFFQDLLLY FPGCISADEV GDRLFLSDTN HHRIIIFENS 301: GKIVDSIGCF PGFEDGDFES AKMLRPTGTL YDEAEDCLYI VDSENHAIRR ANINSRVLET VYPKVIKKTG GLWSWIMEKM GLGKDDDTTV DADTKSEEFD 401: ARSLLFPWHI LKRDDESLLV INKSFSKLWI INFASGEIEE VVEGFSKIIE ICGQSITEKL SVLEHMPSNW LQQQTAAIAS FKEQPSASLL SSFTKLGDDI 501: VMTDIACQRV LKLNRDSGAC SSIQFSNSGI LGLPYWLFIP LERVFNLANG VQEAHLSHTQ ELRLLPGKIS IRLNIEIPPC TELVEPIQES CIWRQTRGAI 601: SEFSSAGSAV EPSEKIGVSQ QWYDELDSLA KEIANPEAAE EEEEEDVNPS EVDREEDGRI HIDCPVKTSP GSSELIVYAA LYLRLARNEE TESATQEELA 701: RKIAKILKPV RNITTMKEDL FVNLLSKSKR ELRDIVFIKP MHVRIRLDSK DHPKADNSRD VILTDSSVEV DVSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)