AT5G39960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : GTP binding;GTP binding | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
GTP binding;GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding, EngA (InterPro:IPR016484), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), Guanylate kinase (InterPro:IPR008144), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 25797 Blast hits to 22413 proteins in 2944 species: Archae - 203; Bacteria - 19262; Metazoa - 305; Fungi - 220; Plants - 200; Viruses - 0; Other Eukaryotes - 5607 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:15994195..15996820 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 69146.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.95 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 621 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSQSLVRAIS ARKNQFSLVF YYRCLYSKLL HSQDQIIASN CSNFSSLGFN STVRHRSHQN RFCSNLISDL NLVRSTNGFA TVSDESNVDN GEKLVDKKPK 101: IFYKKPIDFT KIDANLLPTV MLMGRPNVGK SALYNRLIRR REALVYNTPD DHVTRDIREG IAKLGDLRFN VLDSAGIETE VSSGTILGRT TAMTANVLAR 201: TQFAVLIIDV RAGLHPLDLE VGKWLRKHAP QIKPIVVMNK SESIGSLDEV ASEALALGFG EPIAISAETG LGMTTLYEVL RPLLEDYTVE MLNDIGSQDD 301: VLTDENLSDE IDESKLPLQL AIVGKPNVGK STLLNALLEE ERVLVGPEAG LTRDAVRVQF EFQGRTVYLV DTAGWLERTE RDKGPASLSI MQSRKSLMRA 401: HVIALVLDAE EIIKAKCSMT HSEVVIARRA VEEGRGLVVI VNKMDRLRGR ENSEMYKKIK EAVPIEIQTV IPQITGIPVV FISALEGRGR MEVMKEVTDT 501: YKRWCSRLST GRLNRWLRKV MSRHSWKDTA SQPKIKFFTQ VKARPPTFVA FVSGKTQLLE SDIRFLTRSL KEDFDLGGTP IRIIQRVIPR APPSGTGGGG 601: SGNSSSRVVQ RTTSDKRTLS A |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)