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AT5G39960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP binding;GTP binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP binding;GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding, EngA (InterPro:IPR016484), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), Guanylate kinase (InterPro:IPR008144), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 25797 Blast hits to 22413 proteins in 2944 species: Archae - 203; Bacteria - 19262; Metazoa - 305; Fungi - 220; Plants - 200; Viruses - 0; Other Eukaryotes - 5607 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1160eggNOG:ENOG410IU3HEMBL:CP002688EnsemblPlants:AT5G39960
EnsemblPlants:AT5G39960.1entrez:833993Gene3D:3.30.300.20Gene3D:3.40.50.300
GeneID:833993GO:GO:0005525Gramene:AT5G39960.1HAMAP:MF_00195
hmmpanther:PTHR11649hmmpanther:PTHR11649:SF5InParanoid:F4KFX1InterPro:IPR005225
InterPro:IPR006073InterPro:IPR008144InterPro:IPR015946InterPro:IPR016484
InterPro:IPR027417InterPro:IPR031166InterPro:IPR032859KEGG:ath:AT5G39960
OMA:GWMERSGPANTHER:PTHR11649:SF5PaxDb:F4KFX1Pfam:PF01926
Pfam:PF14714Pfscan:PS50052Pfscan:PS51712PRIDE:F4KFX1
PRINTS:PR00326PROSITE:PS50052PROSITE:PS51712ProteinModelPortal:F4KFX1
Proteomes:UP000006548RefSeq:NP_198812.3SMR:F4KFX1STRING:3702.AT5G39960.1
SUPFAM:SSF52540TAIR:AT5G39960TIGRfam:TIGR00231TIGRfam:TIGR03594
TIGRFAMs:TIGR00231TIGRFAMs:TIGR03594UniGene:At.42998UniProt:F4KFX1
Coordinates (TAIR10) chr5:+:15994195..15996820
Molecular Weight (calculated) 69146.70 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.22
Length 621 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQSLVRAIS ARKNQFSLVF YYRCLYSKLL HSQDQIIASN CSNFSSLGFN STVRHRSHQN RFCSNLISDL NLVRSTNGFA TVSDESNVDN GEKLVDKKPK
101: IFYKKPIDFT KIDANLLPTV MLMGRPNVGK SALYNRLIRR REALVYNTPD DHVTRDIREG IAKLGDLRFN VLDSAGIETE VSSGTILGRT TAMTANVLAR
201: TQFAVLIIDV RAGLHPLDLE VGKWLRKHAP QIKPIVVMNK SESIGSLDEV ASEALALGFG EPIAISAETG LGMTTLYEVL RPLLEDYTVE MLNDIGSQDD
301: VLTDENLSDE IDESKLPLQL AIVGKPNVGK STLLNALLEE ERVLVGPEAG LTRDAVRVQF EFQGRTVYLV DTAGWLERTE RDKGPASLSI MQSRKSLMRA
401: HVIALVLDAE EIIKAKCSMT HSEVVIARRA VEEGRGLVVI VNKMDRLRGR ENSEMYKKIK EAVPIEIQTV IPQITGIPVV FISALEGRGR MEVMKEVTDT
501: YKRWCSRLST GRLNRWLRKV MSRHSWKDTA SQPKIKFFTQ VKARPPTFVA FVSGKTQLLE SDIRFLTRSL KEDFDLGGTP IRIIQRVIPR APPSGTGGGG
601: SGNSSSRVVQ RTTSDKRTLS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)