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AT2G03670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.699
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cell division cycle 48B
Curator
Summary (TAIR10)
CDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog B
Computational
Description (TAIR10)
cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink).
Protein Annotations
BioGrid:296eggNOG:COG0464eggNOG:KOG0730EMBL:AC006836
EMBL:AY062443EMBL:BT008371EMBL:CP002685EnsemblPlants:AT2G03670
EnsemblPlants:AT2G03670.1entrez:814895Gene3D:3.40.50.300GeneID:814895
Genevisible:Q9ZPR1GO:GO:0005524GO:GO:0005634GO:GO:0005856
GO:GO:0007049GO:GO:0009524GO:GO:0015031GO:GO:0051301
Gramene:AT2G03670.1hmmpanther:PTHR23077hmmpanther:PTHR23077:SF54HOGENOM:HOG000223225
InParanoid:Q9ZPR1InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960
InterPro:IPR027417KEGG:ath:AT2G03670OMA:FRYPLEAPaxDb:Q9ZPR1
Pfam:PF00004Pfam:Q9ZPR1PhylomeDB:Q9ZPR1PIR:A84451
PRIDE:Q9ZPR1PRO:PR:Q9ZPR1PROSITE:PS00674ProteinModelPortal:Q9ZPR1
Proteomes:UP000006548RefSeq:NP_178463.1scanprosite:PS00674SMART:SM00382
SMR:Q9ZPR1STRING:3702.AT2G03670.1SUPFAM:SSF52540TAIR:AT2G03670
tair10-symbols:CDC48BUniGene:At.27340UniProt:Q9ZPR1
Coordinates (TAIR10) chr2:+:1117595..1120361
Molecular Weight (calculated) 65913.00 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.11
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)