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AT1G71330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.508
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : non-intrinsic ABC protein 5
Curator
Summary (TAIR10)
member of NAP subfamily
Computational
Description (TAIR10)
non-intrinsic ABC protein 5 (NAP5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 3 (TAIR:AT3G13080.2); Has 184887 Blast hits to 178374 proteins in 3653 species: Archae - 2910; Bacteria - 144984; Metazoa - 5700; Fungi - 3947; Plants - 2517; Viruses - 3; Other Eukaryotes - 24826 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G71330-MONOMERBioGrid:28694eggNOG:COG1132eggNOG:KOG0054
EMBL:AC016162EMBL:CP002684EnsemblPlants:AT1G71330EnsemblPlants:AT1G71330.1
entrez:843474Gene3D:3.40.50.300GeneID:843474Genevisible:Q9FVV9
GO:GO:0005215GO:GO:0005524GO:GO:0016021GO:GO:0042626
Gramene:AT1G71330.1hmmpanther:PTHR24223hmmpanther:PTHR24223:SF181HOGENOM:HOG000216450
InParanoid:Q9FVV9InterPro:IPR003439InterPro:IPR011527InterPro:IPR027417
iPTMnet:Q9FVV9KEGG:ath:AT1G71330OMA:KSRIDIFPaxDb:Q9FVV9
Pfam:PF00005Pfam:Q9FVV9Pfscan:PS50929PhylomeDB:Q9FVV9
PIR:B96738PRIDE:Q9FVV9PRO:PR:Q9FVV9PROSITE:PS50929
ProteinModelPortal:Q9FVV9Proteomes:UP000006548RefSeq:NP_177289.1SMR:Q9FVV9
STRING:3702.AT1G71330.1SUPFAM:SSF52540SUPFAM:SSF90123TAIR:AT1G71330
tair10-symbols:ATNAP5tair10-symbols:NAP5TMHMM:TMhelixUniGene:At.22241
UniGene:At.70230UniProt:Q9FVV9
Coordinates (TAIR10) chr1:-:26884014..26885169
Molecular Weight (calculated) 35812.80 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.01
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRERYDKVI EACSLSKDLE ILSFGDQTVI GERGINLSGG QKQRIHIARA LYQDADIYLF DDPFSAVDAH TGSHLFKEAL RGLLCSKSVI YVTHQVEFLP
101: SADLTLVMKD GRISQAGKYN DILISGTDFR ELIGAHQESL AVVGSADASS VSENSALDEE NGVVRDDIGF DGKQESQDLK NDKLDSGEPQ RQFVQEEERA
201: KGSVALDVYW KYITLAYGGA LVPFILLGQI LFQLLQIGSN YWMAWATPIS EDVQAPVKLS TLMVVYVALA FGSSLCILVR ATLLVTAGYK TATELFHKMH
301: HCIFRSPMSF KIAKTCSKTC IYSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)