AT4G29990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.710 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat transmembrane protein kinase protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat transmembrane protein kinase protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, leaf whorl, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: FLG22-induced receptor-like kinase 1 (TAIR:AT2G19190.1); Has 171907 Blast hits to 132045 proteins in 5043 species: Archae - 136; Bacteria - 15038; Metazoa - 48082; Fungi - 11262; Plants - 76060; Viruses - 464; Other Eukaryotes - 20865 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14665802..14669438 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98750.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 876 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRLRLLSWI SITSCVCLVF AQDQSGFISI DCGIPDDSSY TDEKTNMKYV SDLGFVESGT SHSIVSDLQT TSLERQFQNV RSFPEGKRNC YDIRPQQGKG 101: FKYLIRTRFM YGNYDGFSKT PEFDLYIGAN LWESVVLINE TAIMTKEIIY TPPSDHIHVC LVDKNRGTPF LSVLEIRFLK NDTYDTPYEA LMLGRRWDFG 201: TATNLQIRYK DDFYDRIWMP YKSPYQKTLN TSLTIDETNH NGFRPASIVM RSAIAPGNES NPLKFNWAPD DPRSKFYIYM HFAEVRELQR NETREFDIYI 301: NDVILAENFR PFYLFTDTRS TVDPVGRKMN EIVLQRTGVS TLPPIINAIE IYQINEFLQL PTDQQDVDAM TKIKFKYRVK KNWQGDPCVP VDNSWEGLEC 401: LHSDNNTSPK SIALNLSSSG LTGQIDPAFA NLTSINKLDL SNNSLTGKVP DFLASLPNLT ELNLEGNKLT GSIPAKLLEK SKDGSLSLRF GGNPDLCQSP 501: SCQTTTKKKI GYIVPVVASL AGLLIVLTAL ALIWHFKKRS RRGTISNKPL GVNTGPLDTA KRYFIYSEVV NITNNFERVL GKGGFGKVYH GFLNGDQVAV 601: KILSEESTQG YKEFRAEVEL LMRVHHTNLT SLIGYCNEDN HMALIYEYMA NGNLGDYLSG KSSLILSWEE RLQISLDAAQ GLEYLHYGCK PPIVHRDVKP 701: ANILLNENLQ AKIADFGLSR SFPVEGSSQV STVVAGTIGY LDPEYYATRQ MNEKSDVYSF GVVLLEVITG KPAIWHSRTE SVHLSDQVGS MLANGDIKGI 801: VDQRLGDRFE VGSAWKITEL ALACASESSE QRPTMSQVVM ELKQSIFGRV NNRSDHKDPV RMVTMNLDTE MVPRAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)