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AT1G10610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G16910.1); Has 1439 Blast hits to 1421 proteins in 116 species: Archae - 0; Bacteria - 21; Metazoa - 63; Fungi - 6; Plants - 1338; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J9I0eggNOG:ENOG41115KUEMBL:AC007067EMBL:AC009398
EMBL:AF488620EMBL:AK229375EMBL:CP002684EnsemblPlants:AT1G10610
EnsemblPlants:AT1G10610.1entrez:837604Gene3D:4.10.280.10GeneID:837604
Genevisible:Q0WNR2GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT1G10610.1hmmpanther:PTHR31945
hmmpanther:PTHR31945:SF14HOGENOM:HOG000033929InParanoid:Q0WNR2InterPro:IPR011598
InterPro:IPR025610iPTMnet:Q0WNR2KEGG:ath:AT1G10610ncoils:Coil
OMA:DDPSRFIPaxDb:Q0WNR2Pfam:PF00010Pfam:PF14215
Pfam:Q0WNR2Pfscan:PS50888PhylomeDB:Q0WNR2PIR:F86239
PRIDE:Q0WNR2PRO:PR:Q0WNR2PROSITE:PS50888ProteinModelPortal:Q0WNR2
Proteomes:UP000006548RefSeq:NP_172531.2SMART:SM00353SMR:Q0WNR2
STRING:3702.AT1G10610.1SUPFAM:SSF47459TAIR:AT1G10610UniGene:At.42172
UniProt:Q0WNR2
Coordinates (TAIR10) chr1:+:3506463..3508752
Molecular Weight (calculated) 50236.90 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.36
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMMRGGERV KEFLRPFVDS RTWDLCVIWK LGDDPSRFIE WVGCCCSGCY IDKNIKLENS EEGGTGRKKK ASFCRDDHNK HRIRTLACEA LSRFPLFMPL
101: YPGIHGEVVM SKSPKWLVNS GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP RAEESMSSGV NLSVEGGGSS
201: SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS
301: DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII
401: DVNFTRLDLT VMTVLNVKAN KDGIACGILR DLLLKMMITS I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)