AT4G12680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7475104..7478174 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 64136.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.40 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.33 | ||||||||||||||||||||||||
| Length | 575 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVPKGFFEK LWSFVSFLPY FFLLLLLGVT KALIIGPISS AIILVGNSCV IIGLWPAHFI WTYYCLARTK RIGLVLKTLA LVLFPLPLLL WPVAGIVGSL 101: FGGIAYGFFT PLMATFEAVG ESVTSKCYHC FVDGSFSTIK GSCTVVTDFT DFCFHSYFSY MDELREMVSA DVEPLEIKLS RLPSCLLASL IGVMVDVLLI 201: TAVAVYKSPY MLLKGWKRLL EDLVGREGPF LESVCVPFAG LAILLWPLAV AGAVIASVLS SFFLGLYSGV IVHQEDSFRM GLNYIIAAVS LFDEYVNDLL 301: YLREGTSLPR PCYRTKTETV HGKRILGESK NVDLKSKRSS SLGSKLVSEQ SRTLKKAITL YKPVQVWEWL FKSCEVNGRI LLRDGLIDVK DVEECLVKGN 401: SKKLYIKLPA WTVLQCLLAS AKSNSSGLVI TDGVELTELN SPRDKVFVWL VGPLLIMKEQ IKNLKLTEDE EFCLRKLVMV CKNERTEDWD NTGFPSSDTV 501: RKAQLQAIIR RLQGMVASMS RIPTFRRRFM NLVKVLYIEA LEMGASGNRA GGILKPNSDQ TGNLDRTETP DMDVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)