AT4G12670.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to salicylic acid stimulus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 538 Blast hits to 521 proteins in 95 species: Archae - 0; Bacteria - 1; Metazoa - 236; Fungi - 18; Plants - 123; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:7472530..7474519 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56555.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.81 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.22 | ||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTDKSRKGC RESLGGVDVG LMMEKEAGGV ENVVEVNVSG ASGMVSGKRR EGDGLNNKWI VIEKSQKMQK VAAETHSREN SKADDIDSDK GRKQRGRFNE 101: KNYEISYACI SNAGEGRKGR VRRGNEKNHQ APEAHSIDVG GERKRQRRCD DINHEKAQPH SFAVGIKTKE KRRYSEKNQQ NKTVATTHEH DVLTNDGRTE 201: ARDSDFGEGR SGQGCFHENN QQTKVSSTER CEQEIPRTNK RVSLGSGLGE GRYREGRHIE KNQHTETVKT ETHGKEVSKD RKRKRERGVE RDGDEFYLAE 301: NQDRQCQADM RNDDVAFNKQ ATGFSTVEQV ERKSVSSISS PESTNNVNDP NVAFQELALI IHPKAGVQEQ PIEARPLRSV SSKKPSFQPE KYGHKSYLEK 401: NGPASNDPAQ SATKRKRRFW TLAEVEMLRV GVQKFPGERN IPWRKILQFG RDVFHDERAP SDLKDKWKTL NKIPSDTGKW VSLSTERQPN YYVSEVSSE |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)