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AT3G46640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.
Computational
Description (TAIR10)
PHYTOCLOCK 1 (PCL1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G59570.1); Has 1709 Blast hits to 1707 proteins in 80 species: Archae - 0; Bacteria - 29; Metazoa - 20; Fungi - 11; Plants - 1622; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioGrid:9137eggNOG:ENOG410IW0UeggNOG:ENOG410XXJ3EMBL:AB206576
EMBL:AK227686EMBL:AK319175EMBL:AL133314EMBL:BT006425
EMBL:CP002686EnsemblPlants:AT3G46640EnsemblPlants:AT3G46640.1EnsemblPlants:AT3G46640.2
entrez:823817ExpressionAtlas:Q9SNB4Gene3D:1.10.10.60GeneID:823817
Genevisible:Q9SNB4GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0007623GO:GO:0042753hmmpanther:PTHR31442
hmmpanther:PTHR31442:SF6HOGENOM:HOG000238691InterPro:IPR001005InterPro:IPR006447
InterPro:IPR009057InterPro:IPR017930iPTMnet:Q9SNB4KEGG:ath:AT3G46640
OMA:VAPNDNMPaxDb:Q9SNB4Pfam:PF00249Pfam:Q9SNB4
Pfscan:PS51294PhylomeDB:Q9SNB4PIR:T45601PRIDE:Q9SNB4
PRO:PR:Q9SNB4PROSITE:PS51294ProteinModelPortal:Q9SNB4Proteomes:UP000006548
RefSeq:NP_001030823.1RefSeq:NP_190248.1SMR:Q9SNB4STRING:3702.AT3G46640.3
SUPFAM:SSF46689TAIR:AT3G46640tair10-symbols:LUXtair10-symbols:PCL1
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.47951UniProt:Q9SNB4
Coordinates (TAIR10) chr3:+:17183248..17184219
Molecular Weight (calculated) 34651.00 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.79
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)